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 Directed Networks


Revisiting Bayesian Autoencoders with MCMC

arXiv.org Artificial Intelligence

Bayes' theorem is used as foundation Autoencoders are a family of unsupervised learning methods for inference in Bayesian neural networks, and Markov that use neural network architectures and learning algorithms chain Monte Carlo (MCMC) sampling methods [25] are used to learn a lower-dimensional representation (encoding) for constructing the posterior distribution. Variational inference of the data, which can then be used to reconstruct a representation [26] is another way to approximate the posterior distribution, close to the original input. They thus facilitate dimensionality which approximates an intractable posterior distribution by a reduction for prediction and classification [1, 2], and have tractable one. This makes it particularly suited to large data been successfully applied to image classification [3, 4], face sets and models, and so it has been popular for autoencoders recognition [5, 6], geoscience and remote sensing [7], speechbased and neural networks [13, 27].


From partners to populations: A hierarchical Bayesian account of coordination and convention

arXiv.org Artificial Intelligence

Languages are powerful solutions to coordination problems: they provide stable, shared expectations about how the words we say correspond to the beliefs and intentions in our heads. Yet language use in a variable and non-stationary social environment requires linguistic representations to be flexible: old words acquire new ad hoc or partner-specific meanings on the fly. In this paper, we introduce a hierarchical Bayesian theory of convention formation that aims to reconcile the long-standing tension between these two basic observations. More specifically, we argue that the central computational problem of communication is not simply transmission, as in classical formulations, but learning and adaptation over multiple timescales. Under our account, rapid learning within dyadic interactions allows for coordination on partner-specific common ground, while social conventions are stable priors that have been abstracted away from interactions with multiple partners. We present new empirical data alongside simulations showing how our model provides a cognitive foundation for explaining several phenomena that have posed a challenge for previous accounts: (1) the convergence to more efficient referring expressions across repeated interaction with the same partner, (2) the gradual transfer of partner-specific common ground to novel partners, and (3) the influence of communicative context on which conventions eventually form.


Artificial Intelligence Methods Based Hierarchical Classification of Frontotemporal Dementia to Improve Diagnostic Predictability

arXiv.org Artificial Intelligence

Patients with Frontotemporal Dementia (FTD) have impaired cognitive abilities, executive and behavioral traits, loss of language ability, and decreased memory capabilities. Based on the distinct patterns of cortical atrophy and symptoms, the FTD spectrum primarily includes three variants: behavioral variant FTD (bvFTD), non-fluent variant primary progressive aphasia (nfvPPA), and semantic variant primary progressive aphasia (svPPA). The purpose of this study is to classify MRI images of every single subject into one of the spectrums of the FTD in a hierarchical order by applying data-driven techniques of Artificial Intelligence (AI) on cortical thickness data. This data is computed by FreeSurfer software. We used the Smallest Univalue Segment Assimilating Nucleus (SUSAN) technique to minimize the noise in cortical thickness data. Specifically, we took 204 subjects from the frontotemporal lobar degeneration neuroimaging initiative (NIFTD) database to validate this approach, and each subject was diagnosed in one of the diagnostic categories (bvFTD, svPPA, nfvPPA and cognitively normal). Our proposed automated classification model yielded classification accuracy of 86.5, 76, and 72.7 with support vector machine (SVM), linear discriminant analysis (LDA), and Naive Bayes methods, respectively, in 10-fold cross-validation analysis, which is a significant improvement on a traditional single multi-class model with an accuracy of 82.7, 73.4, and 69.2.


ALT-MAS: A Data-Efficient Framework for Active Testing of Machine Learning Algorithms

arXiv.org Artificial Intelligence

This is clearly demonstrated by the performance of BALD. To be specific, the BNNs trained with BALD have accuracies ranging from 70 90%, but for the models-under-test M-FashionMNIST and M-MNIST-ES (average & bad models), the metric estimation accuracies range from 90 100% - which are much higher than the BNNs' accuracies. For our proposed method ALT-MAS, with the models-under-test M-FashionMNIST, M-MNIST-ES, the behaviours are similar to those of BALD. That is, the metric estimation accuracies are always higher than the BNNs accuracies, especially for per-class metrics. It is worth noting that, for the per-class metrics, even though the BNNs accuracies by ALT-MAS are much lower than the BNNs by BALD, but the metric estimations by ALT-MAS are much higher than by BALD. This asserts the motivation of our sampling approach, that is, the BNN only needs to accurately predict the data points that contribute to the metric estimation. On the other hand, with the good model-under-test M-MNIST, due to our data augmentation training strategy, the BNN accuracies by ALT-MAS are much higher than those of BALD, and thus, the metric estimations by ALT-MAS are also more accurate than those by BALD. Figure 2: The accuracy of the BNN, for each combination of model-under-test (M-MNIST, M-FashionMNIST, & M-MNIST-ES) and metric set. Plotting mean and standard error over 3 repetitions (Best seen in color).


Random Intersection Chains

arXiv.org Machine Learning

Interactions between several features sometimes play an important role in prediction tasks. But taking all the interactions into consideration will lead to an extremely heavy computational burden. For categorical features, the situation is more complicated since the input will be extremely high-dimensional and sparse if one-hot encoding is applied. Inspired by association rule mining, we propose a method that selects interactions of categorical features, called Random Intersection Chains. It uses random intersections to detect frequent patterns, then selects the most meaningful ones among them. At first a number of chains are generated, in which each node is the intersection of the previous node and a random chosen observation. The frequency of patterns in the tail nodes is estimated by maximum likelihood estimation, then the patterns with largest estimated frequency are selected. After that, their confidence is calculated by Bayes' theorem. The most confident patterns are finally returned by Random Intersection Chains. We show that if the number and length of chains are appropriately chosen, the patterns in the tail nodes are indeed the most frequent ones in the data set. We analyze the computation complexity of the proposed algorithm and prove the convergence of the estimators. The results of a series of experiments verify the efficiency and effectiveness of the algorithm.


Particle swarm optimization in constrained maximum likelihood estimation a case study

arXiv.org Artificial Intelligence

Parametric statistical models are commonly used in many sub-fields of bioinformatics [1], [2]. For simplicity and computational concerns, bioinformatic scientists prefer to use differentiable and unconstrained statistical models than non-differentiable and constrained ones. For example, in pseudotime analysis (see section 3), in [3], the authors propose to regress gene expression on pseudotime using cubic B-spline so that an analytical solution is available. Other authors suggest to replace B-spline with a generalized linear model and a gradient-based method is applied to find maximum likelihood estimation [4]. In zero imputation problem, the authors construct a Gamma-Normal mixture model so that parameters can be estimated analytically [5]. In [6], the authors propose an unconstrained LASSO-type objective function and optimize it with a convex optimization algorithm. However, in real applications, it is common to impose constraints on parameters for interpretability. Besides, analytically solutions are not always available and the likelihood function is not differentiable or convex if discrete parameters are contained. Thus, constrained models without desirable mathematical properties can be more realistic and interpretable in many cases.


Exploration of Spanish Olive Oil Quality with a Miniaturized Low-Cost Fluorescence Sensor and Machine Learning Techniques

arXiv.org Artificial Intelligence

Extra virgin olive oil (EVOO) is the highest quality of olive oil and is characterized by highly beneficial nutritional properties. The large increase in both consumption and fraud, for example through adulteration, creates new challenges and an increasing demand for developing new quality assessment methodologies that are easier and cheaper to perform. As of today, the determination of olive oil quality is performed by producers through chemical analysis and organoleptic evaluation. The chemical analysis requires the advanced equipment and chemical knowledge of certified laboratories, and has therefore a limited accessibility. In this work a minimalist, portable and low-cost sensor is presented, which can perform olive oil quality assessment using fluorescence spectroscopy. The potential of the proposed technology is explored by analyzing several olive oils of different quality levels, EVOO, virgin olive oil (VOO), and lampante olive oil (LOO). The spectral data were analyzed using a large number of machine learning methods, including artificial neural networks. The analysis performed in this work demonstrates the possibility of performing classification of olive oil in the three mentioned classes with an accuracy of 100$\%$. These results confirm that this minimalist low-cost sensor has the potential of substituting expensive and complex chemical analysis.


Signal Processing and Machine Learning Techniques for Terahertz Sensing: An Overview

arXiv.org Artificial Intelligence

Following the recent progress in Terahertz (THz) signal generation and radiation methods, joint THz communications and sensing applications are shaping the future of wireless systems. Towards this end, THz spectroscopy is expected to be carried over user equipment devices to identify material and gaseous components of interest. THz-specific signal processing techniques should complement this re-surged interest in THz sensing for efficient utilization of the THz band. In this paper, we present an overview of these techniques, with an emphasis on signal pre-processing (standard normal variate normalization, min-max normalization, and Savitzky-Golay filtering), feature extraction (principal component analysis, partial least squares, t-distributed stochastic neighbor embedding, and nonnegative matrix factorization), and classification techniques (support vector machines, k-nearest neighbor, discriminant analysis, and naive Bayes). We also address the effectiveness of deep learning techniques by exploring their promising sensing capabilities at the THz band. Lastly, we investigate the performance and complexity trade-offs of the studied methods in the context of joint communications and sensing; we motivate the corresponding use-cases, and we present few future research directions in the field.


Stopping Criterion for Active Learning Based on Error Stability

arXiv.org Machine Learning

Active learning is a framework for supervised learning to improve the predictive performance by adaptively annotating a small number of samples. To realize efficient active learning, both an acquisition function that determines the next datum and a stopping criterion that determines when to stop learning should be considered. In this study, we propose a stopping criterion based on error stability, which guarantees that the change in generalization error upon adding a new sample is bounded by the annotation cost and can be applied to any Bayesian active learning. We demonstrate that the proposed criterion stops active learning at the appropriate timing for various learning models and real datasets.


Approximate Bayesian inference from noisy likelihoods with Gaussian process emulated MCMC

arXiv.org Machine Learning

We present an efficient approach for doing approximate Bayesian inference when only a limited number of noisy likelihood evaluations can be obtained due to computational constraints, which is becoming increasingly common for applications of complex models. Our main methodological innovation is to model the log-likelihood function using a Gaussian process (GP) in a local fashion and apply this model to emulate the progression that an exact Metropolis-Hastings (MH) algorithm would take if it was applicable. New log-likelihood evaluation locations are selected using sequential experimental design strategies such that each MH accept/reject decision is done within a pre-specified error tolerance. The resulting approach is conceptually simple and sample-efficient as it takes full advantage of the GP model. It is also more robust to violations of GP modelling assumptions and better suited for the typical situation where the posterior is substantially more concentrated than the prior, compared with various existing inference methods based on global GP surrogate modelling. We discuss the probabilistic interpretations and central theoretical aspects of our approach, and we then demonstrate the benefits of the resulting algorithm in the context of likelihood-free inference for simulator-based statistical models.