Inductive Learning
Leveraging Clinical Time-Series Data for Prediction: A Cautionary Tale
Sherman, Eli, Gurm, Hitinder, Balis, Ulysses, Owens, Scott, Wiens, Jenna
In healthcare, patient risk stratification models are often learned using time-series data extracted from electronic health records. When extracting data for a clinical prediction task, several formulations exist, depending on how one chooses the time of prediction and the prediction horizon. In this paper, we show how the formulation can greatly impact both model performance and clinical utility. Leveraging a publicly available ICU dataset, we consider two clinical prediction tasks: in-hospital mortality, and hypokalemia. Through these case studies, we demonstrate the necessity of evaluating models using an outcome-independent reference point, since choosing the time of prediction relative to the event can result in unrealistic performance. Further, an outcome-independent scheme outperforms an outcome-dependent scheme on both tasks (In-Hospital Mortality AUROC .882 vs. .831; Serum Potassium: AUROC .829 vs. .740) when evaluated on test sets that mimic real-world use.
A snapshot on nonstandard supervised learning problems: taxonomy, relationships and methods
Charte, David, Charte, Francisco, García, Salvador, Herrera, Francisco
Machine learning is a field which studies how machines can alter and adapt their behavior, improving their actions according to the information they are given. This field is subdivided into multiple areas, among which the best known are supervised learning (e.g. classification and regression) and unsupervised learning (e.g. clustering and association rules). Within supervised learning, most studies and research are focused on well known standard tasks, such as binary classification, multiclass classification and regression with one dependent variable. However, there are many other less known problems. These are what we generically call nonstandard supervised learning problems. The literature about them is much more sparse, and each study is directed to a specific task. Therefore, the definitions, relations and applications of this kind of learners are hard to find. The goal of this paper is to provide the reader with a broad view on the distinct variations of nonstandard supervised problems. A comprehensive taxonomy summarizing their traits is proposed. A review of the common approaches followed to accomplish them and their main applications is provided as well.
Robust Semi-Supervised Learning when Labels are Missing at Random
Liu, Xiuming, Zachariah, Dave, Wågberg, Johan
Semi-supervised learning methods are motivated by the relative paucity of labeled data and aim to utilize large sources of unlabeled data to improve predictive tasks. It has been noted, however, such improvements are not guaranteed in general in some cases the unlabeled data impairs the performance. A fundamental source of error comes from restrictive assumptions about the unlabeled features. In this paper, we develop a semi-supervised learning approach that relaxes such assumptions and is robust with respect to labels missing at random. The approach ensures that uncertainty about the classes is propagated to the unlabeled features in a robust manner. It is applicable using any generative model with associated learning algorithm. We illustrate the approach using both standard synthetic data examples and the MNIST data with unlabeled adversarial examples.
DONUT: CTC-based Query-by-Example Keyword Spotting
Lugosch, Loren, Myer, Samuel, Tomar, Vikrant Singh
Keyword spotting--or wakeword detection--is an essential feature for hands-free operation of modern voice-controlled devices. With such devices becoming ubiquitous, users might want to choose a personalized custom wakeword. In this work, we present DONUT, a CTC-based algorithm for online query-by-example keyword spotting that enables custom wakeword detection. The algorithm works by recording a small number of training examples from the user, generating a set of label sequence hypotheses from these training examples, and detecting the wakeword by aggregating the scores of all the hypotheses given a new audio recording. Our method combines the generalization and interpretability of CTC-based keyword spotting with the user-adaptation and convenience of a conventional query-by-example system. DONUT has low computational requirements and is well-suited for both learning and inference on embedded systems without requiring private user data to be uploaded to the cloud.
Stepping Stones to Inductive Synthesis of Low-Level Looping Programs
Inductive program synthesis, from input/output examples, can provide an opportunity to automatically create programs from scratch without presupposing the algorithmic form of the solution. For induction of general programs with loops (as opposed to loop-free programs, or synthesis for domain-specific languages), the state of the art is at the level of introductory programming assignments. Most problems that require algorithmic subtlety, such as fast sorting, have remained out of reach without the benefit of significant problem-specific background knowledge. A key challenge is to identify cues that are available to guide search towards correct looping programs. We present MAKESPEARE, a simple delayed-acceptance hillclimbing method that synthesizes low-level looping programs from input/output examples. During search, delayed acceptance bypasses small gains to identify significantly-improved stepping stone programs that tend to generalize and enable further progress. The method performs well on a set of established benchmarks, and succeeds on the previously unsolved "Collatz Numbers" program synthesis problem. Additional benchmarks include the problem of rapidly sorting integer arrays, in which we observe the emergence of comb sort (a Shell sort variant that is empirically fast). MAKESPEARE has also synthesized a record-setting program on one of the puzzles from the TIS-100 assembly language programming game.
Robust Active Learning for Electrocardiographic Signal Classification
The classification of electrocardiographic (ECG) signals is a challenging problem for healthcare industry. Traditional supervised learning methods require a large number of labeled data which is usually expensive and difficult to obtain for ECG signals. Active learning is well-suited for ECG signal classification as it aims at selecting the best set of labeled data in order to maximize the classification performance. Motivated by the fact that ECG data are usually heavily unbalanced among different classes and the class labels are noisy as they are manually labeled, this paper proposes a novel solution based on robust active learning for addressing these challenges. The key idea is to first apply the clustering of the data in a low dimensional embedded space and then select the most information instances within local clusters. By selecting the most informative instances relying on local average minimal distances, the algorithm tends to select the data for labelling in a more diversified way. Finally, the robustness of the model is further enhanced by adding a novel noisy label reduction scheme after the selection of the labeled data. Experiments on the ECG signal classification from the MIT-BIH arrhythmia database demonstrate the effectiveness of the proposed algorithm.
Machine Decisions and Human Consequences
Scantamburlo, Teresa, Charlesworth, Andrew, Cristianini, Nello
As we increasingly delegate decision-making to algorithms, whether directly or indirectly, important questions emerge in circumstances where those decisions have direct consequences for individual rights and personal opportunities, as well as for the collective good. A key problem for policymakers is that the social implications of these new methods can only be grasped if there is an adequate comprehension of their general technical underpinnings. The discussion here focuses primarily on the case of enforcement decisions in the criminal justice system, but draws on similar situations emerging from other algorithms utilised in controlling access to opportunities, to explain how machine learning works and, as a result, how decisions are made by modern intelligent algorithms or 'classifiers'. It examines the key aspects of the performance of classifiers, including how classifiers learn, the fact that they operate on the basis of correlation rather than causation, and that the term 'bias' in machine learning has a different meaning to common usage.An example of a real world 'classifier', the Harm Assessment Risk Tool (HART), is examined, through identification of its technical features: the classification method, the training data and the test data, the features and the labels, validation and performance measures. Four normative benchmarks are then considered by reference to HART: (a) prediction accuracy (b) fairness and equality before the law (c) transparency and accountability (d) informational privacy and freedom of expression, in order to demonstrate how its technical features have important normative dimensions that bear directly on the extent to which the system can be regarded as a viable and legitimate support for, or even alternative to, existing human decision-makers.
Learning From Positive and Unlabeled Data: A Survey
Learning from positive and unlabeled data or PU learning is the setting where a learner only has access to positive examples and unlabeled data. The assumption is that the unlabeled data can contain both positive and negative examples. This setting has attracted increasing interest within the machine learning literature as this type of data naturally arises in applications such as medical diagnosis and knowledge base completion. This article provides a survey of the current state of the art in PU learning. It proposes seven key research questions that commonly arise in this field and provides a broad overview of how the field has tried to address them.
Explainable cardiac pathology classification on cine MRI with motion characterization by semi-supervised learning of apparent flow
Zheng, Qiao, Delingette, Hervé, Ayache, Nicholas
We propose a method to classify cardiac pathology based on a novel approach to extract image derived features to characterize the shape and motion of the heart. An original semi-supervised learning procedure, which makes efficient use of a large amount of non-segmented images and a small amount of images segmented manually by experts, is developed to generate pixel-wise apparent flow between two time points of a 2D+t cine MRI image sequence. Combining the apparent flow maps and cardiac segmentation masks, we obtain a local apparent flow corresponding to the 2D motion of myocardium and ventricular cavities. This leads to the generation of time series of the radius and thickness of myocardial segments to represent cardiac motion. These time series of motion features are reliable and explainable characteristics of pathological cardiac motion. Furthermore, they are combined with shape-related features to classify cardiac pathologies. Using only nine feature values as input, we propose an explainable, simple and flexible model for pathology classification. On ACDC training set and testing set, the model achieves 95% and 94% respectively as classification accuracy. Its performance is hence comparable to that of the state-of-the-art. Comparison with various other models is performed to outline some advantages of our model.
THORS: An Efficient Approach for Making Classifiers Cost-sensitive
In this paper, we propose an effective TH resholding method based on ORder S tatistic, called THORS, to convert an arbitrary scoring-type classifier, which can induce a continuous cumulative distribution function of the score, into a cost-sensitive one. The procedure, uses order statistic to find an optimal threshold for classification, requiring almost no knowledge of classifiers itself. Unlike common data-driven methods, we analytically show that THORS has theoretical guaranteed performance, theoretical bounds for the costs and lower time complexity. Coupled with empirical results on several real-world data sets, we argue that THORS is the preferred cost-sensitive technique. Key words: Classification; Cost-sensitive learning; Imbalanced data set; Statistical learning; Threshold adjusting.