We consider estimation of multiple high-dimensional Gaussian graphical models corresponding to a single set of nodes under several distinct conditions. We assume that most aspects of the networks are shared, but that there are some structured differences between them. Specifically, the network differences are generated from node perturbations: a few nodes are perturbed across networks, and most or all edges stemming from such nodes differ between networks. This corresponds to a simple model for the mechanism underlying many cancers, in which the gene regulatory network is disrupted due to the aberrant activity of a few specific genes. We propose to solve this problem using the structured joint graphical lasso, a convex optimization problem that is based upon the use of a novel symmetric overlap norm penalty, which we solve using an alternating directions method of multipliers algorithm. Our proposal is illustrated on synthetic data and on an application to brain cancer gene expression data.

Both random Fourier features and the Nyström method have been successfully applied to efficient kernel learning. In this work, we investigate the fundamental difference between these two approaches, and how the difference could affect their generalization performances. Unlike approaches based on random Fourier features where the basis functions (i.e., cosine and sine functions) are sampled from a distribution {\it independent} from the training data, basis functions used by the Nyström method are randomly sampled from the training examples and are therefore {\it data dependent}. By exploring this difference, we show that when there is a large gap in the eigen-spectrum of the kernel matrix, approaches based the Nyström method can yield impressively better generalization error bound than random Fourier features based approach. We empirically verify our theoretical findings on a wide range of large data sets.

Given one feature of a novel animal, humans readily make inferences about other features of the animal. For example, winged creatures often fly, and creatures that eat fish often live in the water. We explore the knowledge that supports these inferences and compare two approaches. The first approach proposes that humans rely on abstract representations of dependency relationships between features, and is formalized here as a graphical model. The second approach proposes that humans rely on specific knowledge of previously encountered animals, and is formalized here as a family of exemplar models.

We study multi-label prediction for structured output spaces, a problem that occurs, for example, in object detection in images, secondary structure prediction in computational biology, and graph matching with symmetries. Conventional multi-label classification techniques are typically not applicable in this situation, because they require explicit enumeration of the label space, which is infeasible in case of structured outputs. Relying on techniques originally designed for single- label structured prediction, in particular structured support vector machines, results in reduced prediction accuracy, or leads to infeasible optimization problems. In this work we derive a maximum-margin training formulation for multi-label structured prediction that remains computationally tractable while achieving high prediction accuracy. It also shares most beneficial properties with single-label maximum-margin approaches, in particular a formulation as a convex optimization problem, efficient working set training, and PAC-Bayesian generalization bounds.

While human listeners excel at selectively attending to a conversation in a cocktail party, machine performance is still far inferior by comparison. We show that the cocktail party problem, or the speech separation problem, can be effectively approached via structured prediction. To account for temporal dynamics in speech, we employ conditional random fields (CRFs) to classify speech dominance within each time-frequency unit for a sound mixture. To capture complex, nonlinear relationship between input and output, both state and transition feature functions in CRFs are learned by deep neural networks. The formulation of the problem as classification allows us to directly optimize a measure that is well correlated with human speech intelligibility.

We develop a novel approach for supervised learning based on adaptively partitioning the feature space into different regions and learning local region-specific classifiers. We formulate an empirical risk minimization problem that incorporates both partitioning and classification in to a single global objective. We show that space partitioning can be equivalently reformulated as a supervised learning problem and consequently any discriminative learning method can be utilized in conjunction with our approach. Nevertheless, we consider locally linear schemes by learning linear partitions and linear region classifiers. Locally linear schemes can not only approximate complex decision boundaries and ensure low training error but also provide tight control on over-fitting and generalization error.

This paper presents a kernel-based discriminative learning framework on probability measures. Rather than relying on large collections of vectorial training examples, our framework learns using a collection of probability distributions that have been constructed to meaningfully represent training data. By representing these probability distributions as mean embeddings in the reproducing kernel Hilbert space (RKHS), we are able to apply many standard kernel-based learning techniques in straightforward fashion. To accomplish this, we construct a generalization of the support vector machine (SVM) called a support measure machine (SMM). Our analyses of SMMs provides several insights into their relationship to traditional SVMs.

For the task of generating complex outputs such as source code, editing existing outputs can be easier than generating complex outputs from scratch. With this motivation, we propose an approach that first retrieves a training example based on the input (e.g., natural language description) and then edits it to the desired output (e.g., code). Our contribution is a computationally efficient method for learning a retrieval model that embeds the input in a task-dependent way without relying on a hand-crafted metric or incurring the expense of jointly training the retriever with the editor. Our retrieve-and-edit framework can be applied on top of any base model. We show that on a new autocomplete task for GitHub Python code and the Hearthstone cards benchmark, retrieve-and-edit significantly boosts the performance of a vanilla sequence-to-sequence model on both tasks.

We study the sample complexity of semi-supervised learning (SSL) and introduce new assumptions based on the mismatch between a mixture model learned from unlabeled data and the true mixture model induced by the (unknown) class conditional distributions. Under these assumptions, we establish an $\Omega(K\log K)$ labeled sample complexity bound without imposing parametric assumptions, where $K$ is the number of classes. Our results suggest that even in nonparametric settings it is possible to learn a near-optimal classifier using only a few labeled samples. Unlike previous theoretical work which focuses on binary classification, we consider general multiclass classification ($K 2$), which requires solving a difficult permutation learning problem. This permutation defines a classifier whose classification error is controlled by the Wasserstein distance between mixing measures, and we provide finite-sample results characterizing the behaviour of the excess risk of this classifier.

We propose to solve a label ranking problem as a structured output regression task. In this view, we adopt a least square surrogate loss approach that solves a supervised learning problem in two steps: a regression step in a well-chosen feature space and a pre-image (or decoding) step. We use specific feature maps/embeddings for ranking data, which convert any ranking/permutation into a vector representation. These embeddings are all well-tailored for our approach, either by resulting in consistent estimators, or by solving trivially the pre-image problem which is often the bottleneck in structured prediction. Their extension to the case of incomplete or partial rankings is also discussed.