Evolutionary Systems
An efficient hybrid classification approach for COVID-19 based on Harris Hawks Optimization and Salp Swarm Optimization
Issa, Abubakr, Ali, Yossra, Rashid, Tarik
Feature selection can be defined as one of the pre-processing steps that decrease the dimensionality of a dataset by identifying the most significant attributes while also boosting the accuracy of classification. For solving feature selection problems, this study presents a hybrid binary version of the Harris Hawks Optimization algorithm (HHO) and Salp Swarm Optimization (SSA) (HHOSSA) for Covid-19 classification. The proposed (HHOSSA) presents a strategy for improving the basic HHO's performance using the Salp algorithm's power to select the best fitness values. The HHOSSA was tested against two well-known optimization algorithms, the Whale Optimization Algorithm (WOA) and the Grey wolf optimizer (GWO), utilizing a total of 800 chest X-ray images. A total of four performance metrics (Accuracy, Recall, Precision, F1) were employed in the studies using three classifiers (Support vector machines (SVMs), k-Nearest Neighbor (KNN), and Extreme Gradient Boosting (XGBoost)). The proposed algorithm (HHOSSA) achieved 96% accuracy with the SVM classifier, and 98% accuracy with two classifiers, XGboost and KNN.
Parallel Automatic History Matching Algorithm Using Reinforcement Learning
Alolayan, Omar S., Alomar, Abdullah O., Williams, John R.
Optimally developing an oil and gas field requires predicting future production using a reservoir model, whose key material properties are tuned in a process called history matching. This process of adjusting the key parameters is non-unique and computationally challenging. Typically, the reservoir model is divided into cells that match the geology of the field. The key properties of these cells, such as porosity and permeability, are assigned initially using core sample data, where available. For computational efficiency, the geological model is converted to a reservoir model using upscaling [6, 20, 49] to reduce the number of the cells in the model. Due to the challenges of finding the key properties in each cell, history matching is used to adjust the values of these properties so the model reflects historical production data [19, 28, 9]. History matching is typically done by matching the computed pressure and saturation data (oil, gas and water rates) from the simulation model and comparing it the actual historical data. The difference between the actual data and data generated by the reservoir model is then computed using an objective function that quantifies the mismatch between the two quantities.
Co-evolving morphology and control of soft robots using a single genome
When simulating soft robots, both their morphology and their controllers play important roles in task performance. This paper introduces a new method to co-evolve these two components in the same process. We do that by using the hyperNEAT algorithm to generate two separate neural networks in one pass, one responsible for the design of the robot body structure and the other for the control of the robot. The key difference between our method and most existing approaches is that it does not treat the development of the morphology and the controller as separate processes. Similar to nature, our method derives both the "brain" and the "body" of an agent from a single genome and develops them together. While our approach is more realistic and doesn't require an arbitrary separation of processes during evolution, it also makes the problem more complex because the search space for this single genome becomes larger and any mutation to the genome affects "brain" and the "body" at the same time. Additionally, we present a new speciation function that takes into consideration both the genotypic distance, as is the standard for NEAT, and the similarity between robot bodies. By using this function, agents with very different bodies are more likely to be in different species, this allows robots with different morphologies to have more specialized controllers since they won't crossover with other robots that are too different from them. We evaluate the presented methods on four tasks and observe that even if the search space was larger, having a single genome makes the evolution process converge faster when compared to having separated genomes for body and control. The agents in our population also show morphologies with a high degree of regularity and controllers capable of coordinating the voxels to produce the necessary movements.
Stochastic Nonlinear Ensemble Modeling and Control for Robot Team Environmental Monitoring
Edwards, Victoria, Silva, Thales C., Hsieh, M. Ani
We seek methods to model, control, and analyze robot teams performing environmental monitoring tasks. During environmental monitoring, the goal is to have teams of robots collect various data throughout a fixed region for extended periods of time. Standard bottom-up task assignment methods do not scale as the number of robots and task locations increases and require computationally expensive replanning. Alternatively, top-down methods have been used to combat computational complexity, but most have been limited to the analysis of methods which focus on transition times between tasks. In this work, we study a class of nonlinear macroscopic models which we use to control a time-varying distribution of robots performing different tasks throughout an environment. Our proposed ensemble model and control maintains desired time-varying populations of robots by leveraging naturally occurring interactions between robots performing tasks. We validate our approach at multiple fidelity levels including experimental results, suggesting the effectiveness of our approach to perform environmental monitoring.
Hidden-Variables Genetic Algorithm for Variable-Size Design Space Optimal Layout Problems with Application to Aerospace Vehicles
Gamot, Juliette, Balesdent, Mathieu, Tremolet, Arnault, Wuilbercq, Romain, Melab, Nouredine, Talbi, El-Ghazali
The optimal layout of a complex system such as aerospace vehicles consists in placing a given number of components in a container in order to minimize one or several objectives under some geometrical or functional constraints. This paper presents an extended formulation of this problem as a variable-size design space (VSDS) problem to take into account a large number of architectural choices and components allocation during the design process. As a representative example of such systems, considering the layout of a satellite module, the VSDS aspect translates the fact that the optimizer has to choose between several subdivisions of the components. For instance, one large tank of fuel might be placed as well as two smaller tanks or three even smaller tanks for the same amount of fuel. In order to tackle this NP-hard problem, a genetic algorithm enhanced by an adapted hidden-variables mechanism is proposed. This latter is illustrated on a toy case and an aerospace application case representative to real world complexity to illustrate the performance of the proposed algorithms. The results obtained using the proposed mechanism are reported and analyzed.
There's Plenty of Room Right Here: Biological Systems as Evolved, Overloaded, Multi-scale Machines
Bongard, Joshua, Levin, Michael
The applicability of computational models to the biological world is an active topic of debate. We argue that a useful path forward results from abandoning hard boundaries between categories and adopting an observer-dependent, pragmatic view. Such a view dissolves the contingent dichotomies driven by human cognitive biases (e.g., tendency to oversimplify) and prior technological limitations in favor of a more continuous, gradualist view necessitated by the study of evolution, developmental biology, and intelligent machines. Efforts to re-shape living systems for biomedical or bioengineering purposes require prediction and control of their function at multiple scales. This is challenging for many reasons, one of which is that living systems perform multiple functions in the same place at the same time. We refer to this as "polycomputing" - the ability of the same substrate to simultaneously compute different things. This ability is an important way in which living things are a kind of computer, but not the familiar, linear, deterministic kind; rather, living things are computers in the broad sense of computational materials as reported in the rapidly-growing physical computing literature. We argue that an observer-centered framework for the computations performed by evolved and designed systems will improve the understanding of meso-scale events, as it has already done at quantum and relativistic scales. Here, we review examples of biological and technological polycomputing, and develop the idea that overloading of different functions on the same hardware is an important design principle that helps understand and build both evolved and designed systems. Learning to hack existing polycomputing substrates, as well as evolve and design new ones, will have massive impacts on regenerative medicine, robotics, and computer engineering.
Performance assessment and exhaustive listing of 500+ nature inspired metaheuristic algorithms
Ma, Zhongqiang, Wu, Guohua, Suganthan, Ponnuthurai N., Song, Aijuan, Luo, Qizhang
Metaheuristics are popularly used in various fields, and they have attracted much attention in the scientific and industrial communities. In recent years, the number of new metaheuristic names has been continuously growing. Generally, the inventors attribute the novelties of these new algorithms to inspirations from either biology, human behaviors, physics, or other phenomena. In addition, these new algorithms, compared against basic versions of other metaheuristics using classical benchmark problems without shift/rotation, show competitive performances. In this study, we exhaustively tabulate more than 500 metaheuristics. To comparatively evaluate the performance of the recent competitive variants and newly proposed metaheuristics, 11 newly proposed metaheuristics and 4 variants of established metaheuristics are comprehensively compared on the CEC2017 benchmark suite. In addition, whether these algorithms have a search bias to the center of the search space is investigated. The results show that the performance of the newly proposed EBCM (effective butterfly optimizer with covariance matrix adaptation) algorithm performs comparably to the 4 well performing variants of the established metaheuristics and possesses similar properties and behaviors, such as convergence, diversity, exploration and exploitation trade-offs, in many aspects. The performance of all 15 of the algorithms is likely to deteriorate due to certain transformations, while the 4 state-of-the-art metaheuristics are less affected by transformations such as the shifting of the global optimal point away from the center of the search space. It should be noted that, except EBCM, the other 10 new algorithms proposed mostly during 2019-2020 are inferior to the well performing 2017 variants of differential evolution and evolution strategy in terms of convergence speed and global search ability on CEC 2017 functions.
Steel Phase Kinetics Modeling using Symbolic Regression
Piringer, David, Bloder, Bernhard, Kronberger, Gabriel
We describe an approach for empirical modeling of steel phase kinetics based on symbolic regression and genetic programming. The algorithm takes processed data gathered from dilatometer measurements and produces a system of differential equations that models the phase kinetics. Our initial results demonstrate that the proposed approach allows to identify compact differential equations that fit the data. The model predicts ferrite, pearlite and bainite formation for a single steel type. Martensite is not yet included in the model. Future work shall incorporate martensite and generalize to multiple steel types with different chemical compositions.
Multi-embodiment Legged Robot Control as a Sequence Modeling Problem
Yu, Chen, Zhang, Weinan, Lai, Hang, Tian, Zheng, Kneip, Laurent, Wang, Jun
Robots are traditionally bounded by a fixed embodiment during their operational lifetime, which limits their ability to adapt to their surroundings. Co-optimizing control and morphology of a robot, however, is often inefficient due to the complex interplay between the controller and morphology. In this paper, we propose a learning-based control method that can inherently take morphology into consideration such that once the control policy is trained in the simulator, it can be easily deployed to robots with different embodiments in the real world. In particular, we present the Embodiment-aware Transformer (EAT), an architecture that casts this control problem as conditional sequence modeling. EAT outputs the optimal actions by leveraging a causally masked Transformer. By conditioning an autoregressive model on the desired robot embodiment, past states, and actions, our EAT model can generate future actions that best fit the current robot embodiment. Experimental results show that EAT can outperform all other alternatives in embodiment-varying tasks, and succeed in an example of real-world evolution tasks: stepping down a stair through updating the morphology alone. We hope that EAT will inspire a new push toward real-world evolution across many domains, where algorithms like EAT can blaze a trail by bridging the field of evolutionary robotics and big data sequence modeling.
Molecule optimization via multi-objective evolutionary in implicit chemical space
Xia, Xin, Su, Yansen, Zheng, Chunhou, Zeng, Xiangxiang
Machine learning methods have been used to accelerate the molecule optimization process. However, efficient search for optimized molecules satisfying several properties with scarce labeled data remains a challenge for machine learning molecule optimization. In this study, we propose MOMO, a multi-objective molecule optimization framework to address the challenge by combining learning of chemical knowledge with Pareto-based multi-objective evolutionary search. To learn chemistry, it employs a self-supervised codec to construct an implicit chemical space and acquire the continues representation of molecules. To explore the established chemical space, MOMO uses multi-objective evolution to comprehensively and efficiently search for similar molecules with multiple desirable properties. We demonstrate the high performance of MOMO on four multi-objective property and similarity optimization tasks, and illustrate the search capability of MOMO through case studies. Remarkably, our approach significantly outperforms previous approaches in optimizing three objectives simultaneously. The results show the optimization capability of MOMO, suggesting to improve the success rate of lead molecule optimization.