In Artificial Intelligence, there is an increasing demand for adaptive models capable of dealing with a diverse spectrum of learning tasks, surpassing the limitations of systems devised to cope with a single task. The recent emergence of General-Purpose Artificial Intelligence Systems (GPAIS) poses model configuration and adaptability challenges at far greater complexity scales than the optimal design of traditional Machine Learning models. Evolutionary Computation (EC) has been a useful tool for both the design and optimization of Machine Learning models, endowing them with the capability to configure and/or adapt themselves to the task under consideration. Therefore, their application to GPAIS is a natural choice. This paper aims to analyze the role of EC in the field of GPAIS, exploring the use of EC for their design or enrichment. We also match GPAIS properties to Machine Learning areas in which EC has had a notable contribution, highlighting recent milestones of EC for GPAIS. Furthermore, we discuss the challenges of harnessing the benefits of EC for GPAIS, presenting different strategies to both design and improve GPAIS with EC, covering tangential areas, identifying research niches, and outlining potential research directions for EC and GPAIS.

Deep learning holds a big promise for optimizing existing peptides with more desirable properties, a critical step towards accelerating new drug discovery. Despite the recent emergence of several optimized Antimicrobial peptides(AMP) generation methods, multi-objective optimizations remain still quite challenging for the idealism-realism tradeoff. Here, we establish a multi-objective AMP synthesis pipeline (MoFormer) for the simultaneous optimization of multi-attributes of AMPs. MoFormer improves the desired attributes of AMP sequences in a highly structured latent space, guided by conditional constraints and fine-grained multi-descriptor.We show that MoFormer outperforms existing methods in the generation task of enhanced antimicrobial activity and minimal hemolysis. We also utilize a Pareto-based non-dominated sorting algorithm and proxies based on large model fine-tuning to hierarchically rank the candidates. We demonstrate substantial property improvement using MoFormer from two perspectives: (1) employing molecular simulations and scoring interactions among amino acids to decipher the structure and functionality of AMPs; (2) visualizing latent space to examine the qualities and distribution features, verifying an effective means to facilitate multi-objective optimization AMPs with design constraints.

Epigraphs Stone inscriptions are important artifacts in the field of archaeology. Although several cultures follow different methods as primary forms of writing, for example, palm leaf manuscripts by Dravidians, papyrus manuscripts by Egyptians, and Animal Hide manuscripts by several European civilizations, stone inscriptions remained a robust secondary form of writing across all the civilizations that practiced writing. This is mainly due to the robustness associated with the medium, as it is impossible to manipulate, change the stone inscriptions and very difficult to mutilate them. Therefore, several historically important documents such as treaties, grants, and tombstones are engraved in stones.

Acute lymphoblastic leukemia (ALL) severity is determined by the presence and ratios of blast cells (abnormal white blood cells) in both bone marrow and peripheral blood. Manual diagnosis of this disease is a tedious and time-consuming operation, making it difficult for professionals to accurately examine blast cell characteristics. To address this difficulty, researchers use deep learning and machine learning. In this paper, a ResNet-based feature extractor is utilized to detect ALL, along with a variety of feature selectors and classifiers. To get the best results, a variety of transfer learning models, including the Resnet, VGG, EfficientNet, and DensNet families, are used as deep feature extractors. Following extraction, different feature selectors are used, including Genetic algorithm, PCA, ANOVA, Random Forest, Univariate, Mutual information, Lasso, XGB, Variance, and Binary ant colony. After feature qualification, a variety of classifiers are used, with MLP outperforming the others. The recommended technique is used to categorize ALL and HEM in the selected dataset which is C-NMC 2019. This technique got an impressive 90.71% accuracy and 95.76% sensitivity for the relevant classifications, and its metrics on this dataset outperformed others.

Neural audio synthesis methods now allow specifying ideas in natural language. However, these methods produce results that cannot be easily tweaked, as they are based on large latent spaces and up to billions of uninterpretable parameters. We propose a text-to-audio generation method that leverages a virtual modular sound synthesizer with only 78 parameters. Synthesizers have long been used by skilled sound designers for media like music and film due to their flexibility and intuitive controls. Our method, CTAG, iteratively updates a synthesizer's parameters to produce high-quality audio renderings of text prompts that can be easily inspected and tweaked. Sounds produced this way are also more abstract, capturing essential conceptual features over fine-grained acoustic details, akin to how simple sketches can vividly convey visual concepts. Our results show how CTAG produces sounds that are distinctive, perceived as artistic, and yet similarly identifiable to recent neural audio synthesis models, positioning it as a valuable and complementary tool.

Large Language Models (LLMs) such as GPT-4 have demonstrated their ability to understand natural language and generate complex code snippets. This paper introduces a novel Large Language Model Evolutionary Algorithm (LLaMEA) framework, leveraging GPT models for the automated generation and refinement of algorithms. Given a set of criteria and a task definition (the search space), LLaMEA iteratively generates, mutates and selects algorithms based on performance metrics and feedback from runtime evaluations. This framework offers a unique approach to generating optimized algorithms without requiring extensive prior expertise. We show how this framework can be used to generate novel black-box metaheuristic optimization algorithms automatically. LLaMEA generates multiple algorithms that outperform state-of-the-art optimization algorithms (Covariance Matrix Adaptation Evolution Strategy and Differential Evolution) on the five dimensional black box optimization benchmark (BBOB). The algorithms also show competitive performance on the 10- and 20-dimensional instances of the test functions, although they have not seen such instances during the automated generation process. The results demonstrate the feasibility of the framework and identify future directions for automated generation and optimization of algorithms via LLMs.

Cell-penetrating peptides (CPPs) are powerful vectors for the intracellular delivery of a diverse array of therapeutic molecules. Despite their potential, the rational design of CPPs remains a challenging task that often requires extensive experimental efforts and iterations. In this study, we introduce an innovative approach for the de novo design of CPPs, leveraging the strengths of machine learning (ML) and optimization algorithms. Our strategy, named LightCPPgen, integrates a LightGBM-based predictive model with a genetic algorithm (GA), enabling the systematic generation and optimization of CPP sequences. At the core of our methodology is the development of an accurate, efficient, and interpretable predictive model, which utilizes 20 explainable features to shed light on the critical factors influencing CPP translocation capacity. The CPP predictive model works synergistically with an optimization algorithm, which is tuned to enhance computational efficiency while maintaining optimization performance. The GA solutions specifically target the candidate sequences' penetrability score, while trying to maximize similarity with the original non-penetrating peptide in order to retain its original biological and physicochemical properties. By prioritizing the synthesis of only the most promising CPP candidates, LightCPPgen can drastically reduce the time and cost associated with wet lab experiments. In summary, our research makes a substantial contribution to the field of CPP design, offering a robust framework that combines ML and optimization techniques to facilitate the rational design of penetrating peptides, by enhancing the explainability and interpretability of the design process.

We study the addition of shape constraints and their consideration during the parameter estimation step of symbolic regression (SR). Shape constraints serve as a means to introduce prior knowledge about the shape of the otherwise unknown model function into SR. Unlike previous works that have explored shape constraints in SR, we propose minimizing shape constraint violations during parameter estimation using gradient-based numerical optimization. We test three algorithm variants to evaluate their performance in identifying three symbolic expressions from a synthetically generated data set. This paper examines two benchmark scenarios: one with varying noise levels and another with reduced amounts of training data. The results indicate that incorporating shape constraints into the expression search is particularly beneficial when data is scarce. Compared to using shape constraints only in the selection process, our approach of minimizing violations during parameter estimation shows a statistically significant benefit in some of our test cases, without being significantly worse in any instance.

People are remarkably capable of generating their own goals, beginning with child's play and continuing into adulthood. Despite considerable empirical and computational work on goals and goal-oriented behavior, models are still far from capturing the richness of everyday human goals. Here, we bridge this gap by collecting a dataset of human-generated playful goals, modeling them as reward-producing programs, and generating novel human-like goals through program synthesis. Reward-producing programs capture the rich semantics of goals through symbolic operations that compose, add temporal constraints, and allow for program execution on behavioral traces to evaluate progress. To build a generative model of goals, we learn a fitness function over the infinite set of possible goal programs and sample novel goals with a quality-diversity algorithm. Human evaluators found that model-generated goals, when sampled from partitions of program space occupied by human examples, were indistinguishable from human-created games. We also discovered that our model's internal fitness scores predict games that are evaluated as more fun to play and more human-like.

Existing efforts are dedicated to designing many topologies and graph-aware strategies for the graph Transformer, which greatly improve the model's representation capabilities. However, manually determining the suitable Transformer architecture for a specific graph dataset or task requires extensive expert knowledge and laborious trials. This paper proposes an evolutionary graph Transformer architecture search framework (EGTAS) to automate the construction of strong graph Transformers. We build a comprehensive graph Transformer search space with the micro-level and macro-level designs. EGTAS evolves graph Transformer topologies at the macro level and graph-aware strategies at the micro level. Furthermore, a surrogate model based on generic architectural coding is proposed to directly predict the performance of graph Transformers, substantially reducing the evaluation cost of evolutionary search. We demonstrate the efficacy of EGTAS across a range of graph-level and node-level tasks, encompassing both small-scale and large-scale graph datasets. Experimental results and ablation studies show that EGTAS can construct high-performance architectures that rival state-of-the-art manual and automated baselines.