Materials
From Molecules to Mixtures: Learning Representations of Olfactory Mixture Similarity using Inductive Biases
Tom, Gary, Ser, Cher Tian, Rajaonson, Ella M., Lo, Stanley, Park, Hyun Suk, Lee, Brian K., Sanchez-Lengeling, Benjamin
Olfaction -- how molecules are perceived as odors to humans -- remains poorly understood. Recently, the principal odor map (POM) was introduced to digitize the olfactory properties of single compounds. However, smells in real life are not pure single molecules, but complex mixtures of molecules, whose representations remain relatively under-explored. In this work, we introduce POMMix, an extension of the POM to represent mixtures. Our representation builds upon the symmetries of the problem space in a hierarchical manner: (1) graph neural networks for building molecular embeddings, (2) attention mechanisms for aggregating molecular representations into mixture representations, and (3) cosine prediction heads to encode olfactory perceptual distance in the mixture embedding space. POMMix achieves state-of-the-art predictive performance across multiple datasets. We also evaluate the generalizability of the representation on multiple splits when applied to unseen molecules and mixture sizes. Our work advances the effort to digitize olfaction, and highlights the synergy of domain expertise and deep learning in crafting expressive representations in low-data regimes.
AirIO: Learning Inertial Odometry with Enhanced IMU Feature Observability
Qiu, Yuheng, Xu, Can, Chen, Yutian, Zhao, Shibo, Geng, Junyi, Scherer, Sebastian
Inertial odometry (IO) using only Inertial Measurement Units (IMUs) offers a lightweight and cost-effective solution for Unmanned Aerial Vehicle (UAV) applications, yet existing learning-based IO models often fail to generalize to UAVs due to the highly dynamic and non-linear-flight patterns that differ from pedestrian motion. In this work, we identify that the conventional practice of transforming raw IMU data to global coordinates undermines the observability of critical kinematic information in UAVs. By preserving the body-frame representation, our method achieves substantial performance improvements, with a 66.7% average increase in accuracy across three datasets. Furthermore, explicitly encoding attitude information into the motion network results in an additional 23.8% improvement over prior results. Combined with a data-driven IMU correction model (AirIMU) and an uncertainty-aware Extended Kalman Filter (EKF), our approach ensures robust state estimation under aggressive UAV maneuvers without relying on external sensors or control inputs. Notably, our method also demonstrates strong generalizability to unseen data not included in the training set, underscoring its potential for real-world UAV applications.
BoTier: Multi-Objective Bayesian Optimization with Tiered Composite Objectives
Haddadnia, Mohammad, Grashoff, Leonie, Strieth-Kalthoff, Felix
Scientific optimization problems are usually concerned with balancing multiple competing objectives, which come as preferences over both the outcomes of an experiment (e.g. maximize the reaction yield) and the corresponding input parameters (e.g. minimize the use of an expensive reagent). Typically, practical and economic considerations define a hierarchy over these objectives, which must be reflected in algorithms for sample-efficient experiment planning. Herein, we introduce BoTier, a composite objective that can flexibly represent a hierarchy of preferences over both experiment outcomes and input parameters. We provide systematic benchmarks on synthetic and real-life surfaces, demonstrating the robust applicability of BoTier across a number of use cases. Importantly, BoTier is implemented in an auto-differentiable fashion, enabling seamless integration with the BoTorch library, thereby facilitating adoption by the scientific community.
Impact-resistant, autonomous robots inspired by tensegrity architecture
Johnson, William R. III, Huang, Xiaonan, Lu, Shiyang, Wang, Kun, Booth, Joran W., Bekris, Kostas, Kramer-Bottiglio, Rebecca
Future robots will navigate perilous, remote environments with resilience and autonomy. Researchers have proposed building robots with compliant bodies to enhance robustness, but this approach often sacrifices the autonomous capabilities expected of rigid robots. Inspired by tensegrity architecture, we introduce a tensegrity robot -- a hybrid robot made from rigid struts and elastic tendons -- that demonstrates the advantages of compliance and the autonomy necessary for task performance. This robot boasts impact resistance and autonomy in a field environment and additional advances in the state of the art, including surviving harsh impacts from drops (at least 5.7 m), accurately reconstructing its shape and orientation using on-board sensors, achieving high locomotion speeds (18 bar lengths per minute), and climbing the steepest incline of any tensegrity robot (28 degrees). We characterize the robot's locomotion on unstructured terrain, showcase its autonomous capabilities in navigation tasks, and demonstrate its robustness by rolling it off a cliff.
Structural and mechanical properties of W-Cu compounds characterized by a neural-network-based potential
Liu, Jianchuan, Chen, Tao, Mao, Sheng, Chen, Mohan
Tungsten-copper (W-Cu) compounds are widely utilized in various industrial fields due to their exceptional mechanical properties. In this study, we have developed a neural-network-based deep potential (DP) model that covers a wide range of temperatures, ranging from 0 to 3,000 K, and pressures, varying from 0 to 10 GPa. This study presents a model trained using density functional theory data for full concentration CuxW100-x compounds. Through this model, we systematically investigate the structural and mechanical properties of W-Cu alloys and have the following findings. First, the bulk modulus (B) and Young's modulus (E) of W-Cu alloys exhibit a linear decline as the Cu content increases, indicating a softening trend in the CuxW100-x compounds as the Cu concentration rises. Second, a higher Cu content results in higher critical strain and lower critical stress for these compounds. A brittle-to-ductile transition in the deformation mode predicted is predicted at around 37.5 at. % Cu content. Third, tensile loading tests in the W-Cu gradient structure reveal that Cu-poor region serves as a barrier, hindering shear band propagation while promoting new shear band formation in the Cu-rich region. The above results from the DP model are anticipated to aid in exploring the physical mechanisms underlying the complex phenomena of W-Cu systems and contribute to the advancement of methodologies for materials simulation.
Predictive Modeling and Uncertainty Quantification of Fatigue Life in Metal Alloys using Machine Learning
Chang, Jiang, Basvoju, Deekshith, Vakanski, Aleksandar, Charit, Indrajit, Xian, Min
Recent advancements in machine learning-based methods have demonstrated great potential for improved property prediction in material science. However, reliable estimation of the confidence intervals for the predicted values remains a challenge, due to the inherent complexities in material modeling. This study introduces a novel approach for uncertainty quantification in fatigue life prediction of metal materials based on integrating knowledge from physics-based fatigue life models and machine learning models. The proposed approach employs physics-based input features estimated using the Basquin fatigue model to augment the experimentally collected data of fatigue life. Furthermore, a physics-informed loss function that enforces boundary constraints for the estimated fatigue life of considered materials is introduced for the neural network models. Experimental validation on datasets comprising collected data from fatigue life tests for Titanium alloys and Carbon steel alloys demonstrates the effectiveness of the proposed approach. The synergy between physics-based models and data-driven models enhances the consistency in predicted values and improves uncertainty interval estimates.
Pesti-Gen: Unleashing a Generative Molecule Approach for Toxicity Aware Pesticide Design
Global climate change has reduced crop resilience and pesticide efficacy, making reliance on synthetic pesticides inevitable, even though their widespread use poses significant health and environmental risks. While these pesticides remain a key tool in pest management, previous machine-learning applications in pesticide and agriculture have focused on classification or regression, leaving the fundamental challenge of generating new molecular structures or designing novel candidates unaddressed. In this paper, we propose Pesti-Gen, a novel generative model based on variational auto-encoders, designed to create pesticide candidates with optimized properties for the first time. Specifically, Pesti-Gen leverages a two-stage learning process: an initial pre-training phase that captures a generalized chemical structure representation, followed by a fine-tuning stage that incorporates toxicity-specific information. The model simultaneously optimizes over multiple toxicity metrics, such as (1) livestock toxicity and (2) aqua toxicity to generate environmentally friendly pesticide candidates. Notably, Pesti-Gen achieves approximately 68\% structural validity in generating new molecular structures, demonstrating the model's effectiveness in producing optimized and feasible pesticide candidates, thereby providing a new way for safer and more sustainable pest management solutions.
Review for NeurIPS paper: A Catalyst Framework for Minimax Optimization
Additional Feedback: Questions in random ordering: - Would it be possible to provide dependences on the diameter(s) D_Y (and D_X?) in Table 1? - Reference for point (ii) page 3? - line 147: although this additional evaluation is certainly "negligible" for deterministic methods, is it really the case for stochastic ones? Was this cost taken into account in the numerical experiments? I guess there should be no gain (due to lower bound & EG), but e.g., do we also lose the logarithmic factor? If not, please make it more explicit (e.g., in the abstract; "state-of-the-art" makes it a bit implicit) To go further: - Is it possible to use the method with raw estimates of mu and/or l? - (lines 42-54): Given that there is no known optimal algorithm; is it possible that the lower bound is not tight? In particular, in the abstract, the word "first" is probably a bit abusive, given that there exists closely related methods for closely related settings (e.g., [40]).
Review for NeurIPS paper: A Catalyst Framework for Minimax Optimization
The paper received positive feedback. After reading the rebuttal and discussing the paper, the general consensus is that the paper should be accepted. The area chair agrees with this assessement and follows the reviewer's recommendation. Several suggestions were made to improve the paper (see in particular R1's review), which will be good to take into account for the final version.
Reviews: Depth-First Proof-Number Search with Heuristic Edge Cost and Application to Chemical Synthesis Planning
Originality: PNS and related algorithms have not been evaluated for synthesis planning since work by Heifets and others several years ago. Revisiting this class of algorithms and proposing modifications to improve performance in multi-step synthesis planning is nice to see. Quality: The empirical evaluation is not as strong as it could be, but the conceptual contribution of this work is still important for the problem of synthesis planning. Clarity: The description of algorithms in 254-266 and elsewhere is not complete enough to reimplement the models and baselines. The dataset split, details of template extraction, network training, etc. is not provided either and the code is not available. Significance: The novelty of the modifications to the algorithm may be minor, but evaluating it in the context of this problem is important.