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The Degeneracy Distillery
Makinen, T. Lucas, Bartlett, Deaglan J., Jeffrey, Niall, Wandelt, Benjamin D.
When two or more parameters or labels produce similar data, they are degenerate, or hard to distinguish. Degeneracies render both label prediction and inverse problems difficult, since both machine learning algorithms and probabilistic samplers rely on the distinguishability of data and its gradients with respect to parameters. However, identifying degeneracies in physical models or real-world datasets can be elucidating about the choice of model or the underlying process that produces the data. We present the degeneracy distillery, a method that (1) detects and (2) resolves degenerate parameter combinations (a) automatically and (b) symbolically, from parameter-data (or parameter-simulation) pairs alone, through estimation and flattening of the Fisher information matrix. By exploring the information geometry of the likelihood, we characterize degeneracies as an intrinsic property of the physical model, requiring no realised data observation. We demonstrate our approach on a range of synthetic and real-world problems, discovering symbolic coordinate transformations that identify the combinations of parameters of a model which yield independent effects on the data. The resulting coordinates flatten the Fisher information in expectation globally, in contrast to posterior-based methods that flatten only at a single point, and substantially reduce the simulation budget required for downstream neural posterior estimation. In test cases we require up to $10\times$ fewer simulations for posterior estimation at matched validation calibration whilst simultaneously gaining physical insight on the system.
NoLimits.jl: Flexible and Composable Nonlinear Mixed-Effects Modeling in Julia
Huth, Manuel, Arruda, Jonas, Schmid, Nina, Gusinow, Roy, Wieland, Vincent, Peiter, Clemens, Hasenauer, Jan
Nonlinear mixed-effects models are widely used to analyze longitudinal data, but existing open-source software often supports only a limited subset of the model structures, inference methods, machine-learning components, automatic differentiation techniques, and random-effects distributions required in modern applications. We introduce NoLimits.jl, an open-source Julia package for flexible and composable nonlinear mixed-effects modeling. Its macro-based modeling language enables observation and latent-state models to be constructed from diverse building blocks, including ordinary differential equations, Markov models, and neural networks. NoLimits.jl supports flexible, covariate-dependent observation and random-effects distributions and provides a unified interface to frequentist inference through Laplace approximation, stochastic expectation maximization, and Bayesian Markov chain Monte Carlo methods. We demonstrate the package on three case studies showcasing its workflows, integration of differentiable machine-learning components, and data-driven estimation of random-effects distributions using normalizing flows. Together, these capabilities substantially expand the range of nonlinear mixed-effects models that can be specified, estimated, and compared within a single open-source framework.
Automated Residual Plot Assessment With the R Package autovi and the Shiny Application autovi.web
Li, Weihao, Cook, Dianne, Tanaka, Emi, VanderPlas, Susan, Ackermann, Klaus
Visual assessment of residual plots is a common approach for diagnosing linear models, but it relies on manual evaluation, which does not scale well and can lead to inconsistent decisions across analysts. The lineup protocol, which embeds the observed plot among null plots, can reduce subjectivity but requires even more human effort. In today's data-driven world, such tasks are well suited for automation. We present a new R package that uses a computer vision model to automate the evaluation of residual plots. An accompanying Shiny application is provided for ease of use. Given a sample of residuals, the model predicts a visual signal strength (VSS) and offers supporting information to help analysts assess model fit.
d7a2222b8d41014e060cfeb0995501d0-Paper-Conference.pdf
How can we trust the correctness of a learned model on a particular input of interest? Model accuracy is typically measured on average over a distribution of inputs, giving no guarantee for any fixed input. This paper proposes a theoreticallyfounded solution to this problem: to train Self-Proving models that prove the correctness of their output to a verification algorithm V via an Interactive Proof. SelfProving models satisfy that, with high probability over an input sampled from a given distribution, the model generates a correct output and successfully proves its correctness to V. The soundness property of V guarantees that, for every input, no model can convince V of the correctness of an incorrect output. Thus, a Self-Proving model proves correctness of most of its outputs, while all incorrect outputs (of any model) are detected by V. We devise and analyze two generic methods for learning Self-Proving models: Transcript Learning (TL) which relies on access to transcripts of accepting interactions, and Reinforcement Learning from Verifier Feedback (RLVF) which trains a model by emulating interactions with the verifier.
Least squares variational inference
Variational inference seeks the best approximation of a target distribution within a chosen family, where "best" means minimising Kullback-Leibler divergence. When the approximation family is exponential, the optimal approximation satisfies a fixed-point equation. We introduce LSVI (Least Squares Variational Inference), a gradient-free, Monte Carlo-based scheme for the fixed-point recursion, where each iteration boils down to performing ordinary least squares regression on tempered log-target evaluations under the variational approximation. We show that LSVI is equivalent to biased stochastic natural gradient descent and use this to derive convergence rates with respect to the numbers of samples and iterations. When the approximation family is Gaussian, LSVI involves inverting the Fisher information matrix, whose size grows quadratically with dimension d. We exploit the regression formulation to eliminate the need for this inversion, yielding O(d3) complexity in the full-covariance case and O(d) in the mean-field case. Finally, we numerically demonstrate LSVI's performance on various tasks, including logistic regression, discrete variable selection, and Bayesian synthetic likelihood, showing results competitive with state-of-the-art methods, even when gradients are unavailable.
Adaptive for Private Federated Learning with LoRA
Low-Rank Adaptation (LoRA), which introduces a product of two trainable lowrank matrices into frozen pre-trained weights, is widely used for efficient finetuning of language models in federated learning (FL). However, when combined with differentially private stochastic gradient descent (DP-SGD), LoRA faces substantial noise amplification: DP-SGD perturbs per-sample gradients, and the matrix multiplication of the LoRA update (BA) intensifies this effect. Freezing one matrix (e.g., A) reduces the noise but restricts model expressiveness, often resulting in suboptimal adaptation. To address this, we propose FedSVD, a simple yet effective method that introduces a global reparameterization based on singular value decomposition (SVD).
Dense Associative Memory with Energy
We propose a novel energy function for Dense Associative Memory (DenseAM) networks, the log-sum-ReLU (LSR), inspired by optimal kernel density estimation. Unlike the common log-sum-exponential (LSE) function, LSR is based on the Epanechnikov kernel and enables exact memory retrieval with exponential capacity without requiring exponential separation functions. Moreover, it introduces abundant additional emergent local minima while preserving perfect pattern recovery -- a characteristic previously unseen in DenseAM literature. Empirical results show that LSR energy has significantly more local minima (memories) that have comparable log-likelihood to LSE-based models. Analysis of LSR's emergent memories on image datasets reveals a degree of creativity and novelty, hinting at this method's potential for both large-scale memory storage and generative tasks.
This Time is Different An Perspective on Time Series Foundation Models
We introduce TOTO, a time series forecasting foundation model with 151 million parameters. TOTO uses a modern decoder-only architecture coupled with architectural innovations designed to account for specific challenges found in multivariate observability time series data. TOTO's pre-training corpus is a mixture of observability data, open datasets, and synthetic data, and is 4-10 larger than those of leading time series foundation models. Additionally, we introduce BOOM, a large-scale benchmark consisting of 350 million observations across 2,807 real-world time series. For both TOTO and BOOM, we source observability data exclusively from Datadog's own telemetry and internal observability metrics. Extensive evaluations demonstrate that TOTO achieves state-of-the-art performance on both BOOM and on established general purpose time series forecasting benchmarks.
High-Performance Arithmetic Circuit Optimization via Differentiable Architecture Search
Arithmetic circuit optimization remains a fundamental challenge in modern integrated circuit design. Recent advances have cast this problem within the Learning to Optimize (L2O) paradigm, where intelligent agents autonomously explore high-performance design spaces with encouraging results. However, existing approaches predominantly target coarse-grained architectural configurations, while the crucial interconnect optimization stage is often relegated to oversimplified proxy models or a heuristic approach. This disconnect undermines design quality, leading to suboptimal solutions in the circuit topology search space. To bridge this gap, we present ARITH-DAS, a Differentiable Architecture Search framework for Arithmetic circuits. To the best of our knowledge, ARITH-DAS is the first to formulate interconnect optimization within arithmetic circuits as a differentiable edge prediction problem over a multi-relational directed acyclic graph, enabling fine-grained, proxy-free optimization at the interconnection level. We evaluate ARITH-DAS on a suite of representative arithmetic circuits, including multipliers and multiply-accumulate units. Experiments show substantial improvements over state-of-the-art L2O and conventional methods, achieving up to 27.05% gain in hypervolume of area-delay Pareto frontiers, a standard metric for evaluating multi-objective optimization performance.