textal
Crystallographic Protein Model Building Using AI and Pattern Recognition
TEXTAL is a computer program that automaticallyinterprets electron density maps to determine the atomic structures of proteins through X-ray crystallography. Electron density maps are traditionally interpreted by visually fitting atoms into density patterns. This manual process can be time-consuming and error prone, even for expert crystallographers. To automate the process, TEXTAL employs a variety of AI and pattern-recognition techniques that emulate the decision-making processes of domain experts. In this article, we discuss the various ways AI technology is used in TEXTAL, including neural networks, case-based reasoning, nearest neighbor learning and linear discriminant analysis.
TEXTAL: Crystallographic Protein Model Building Using AI and Pattern Recognition
Gopal, Kreshna, Romo, Tod D., McKee, Erik W., Pai, Reetal, Smith, Jacob N., Sacchettini, James C., Ioerger, Thomas R.
TEXTAL is a computer program that automatically interprets electron density maps to determine the atomic structures of proteins through X-ray crystallography. Electron density maps are traditionally interpreted by visually fitting atoms into density patterns. This manual process can be time-consuming and error prone, even for expert crystallographers. To automate the process, TEXTAL employs a variety of AI and pattern-recognition techniques that emulate the decision-making processes of domain experts.
- Information Technology > Artificial Intelligence > Machine Learning > Pattern Recognition (0.73)
- Information Technology > Artificial Intelligence > Representation & Reasoning > Case-Based Reasoning (0.72)
- Information Technology > Artificial Intelligence > Machine Learning > Statistical Learning (0.47)
TEXTAL: Crystallographic Protein Model Building Using AI and Pattern Recognition
Gopal, Kreshna, Romo, Tod D., McKee, Erik W., Pai, Reetal, Smith, Jacob N., Sacchettini, James C., Ioerger, Thomas R.
TEXTAL is a computer program that automatically interprets electron density maps to determine the atomic structures of proteins through X-ray crystallography. Electron density maps are traditionally interpreted by visually fitting atoms into density patterns. This manual process can be time-consuming and error prone, even for expert crystallographers. Noise in the data and limited resolution make map interpretation challenging. To automate the process, TEXTAL employs a variety of AI and pattern-recognition techniques that emulate the decision-making processes of domain experts. In this article, we discuss the various ways AI technology is used in TEXTAL, including neural networks, case-based reasoning, nearest neighbor learning and linear discriminant analysis. The AI and pattern-recognition approaches have proven to be effective for building protein models even with medium resolution data. TEXTAL is a successfully deployed application; it is being used in more than 100 crystallography labs from 20 countries.
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