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Evaluating the statistical significance of biclusters

Jason D. Lee, Yuekai Sun, Jonathan E. Taylor

Neural Information Processing Systems

Biclustering (also known as submatrix localization) is a problem of high practical relevance in exploratory analysis of high-dimensional data. We develop a framework for performing statistical inference on biclusters found by score-based algorithms. Since the bicluster was selected in a data dependent manner by a biclustering or localization algorithm, this is a form of selective inference . Our framework gives exact (non-asymptotic) confidence intervals and p-values for the significance of the selected biclusters.


Tensor Train Completion from Fiberwise Observations Along a Single Mode

Sofi, Shakir Showkat, De Lathauwer, Lieven

arXiv.org Machine Learning

Tensor completion is an extension of matrix completion aimed at recovering a multiway data tensor by leveraging a given subset of its entries (observations) and the pattern of observation. The low-rank assumption is key in establishing a relationship between the observed and unobserved entries of the tensor. The low-rank tensor completion problem is typically solved using numerical optimization techniques, where the rank information is used either implicitly (in the rank minimization approach) or explicitly (in the error minimization approach). Current theories concerning these techniques often study probabilistic recovery guarantees under conditions such as random uniform observations and incoherence requirements. However, if an observation pattern exhibits some low-rank structure that can be exploited, more efficient algorithms with deterministic recovery guarantees can be designed by leveraging this structure. This work shows how to use only standard linear algebra operations to compute the tensor train decomposition of a specific type of ``fiber-wise" observed tensor, where some of the fibers of a tensor (along a single specific mode) are either fully observed or entirely missing, unlike the usual entry-wise observations. From an application viewpoint, this setting is relevant when it is easier to sample or collect a multiway data tensor along a specific mode (e.g., temporal). The proposed completion method is fast and is guaranteed to work under reasonable deterministic conditions on the observation pattern. Through numerical experiments, we showcase interesting applications and use cases that illustrate the effectiveness of the proposed approach.


Eigenspectrum Analysis of Neural Networks without Aspect Ratio Bias

Hu, Yuanzhe, Goel, Kinshuk, Killiakov, Vlad, Yang, Yaoqing

arXiv.org Artificial Intelligence

Diagnosing deep neural networks (DNNs) by analyzing the eigenspectrum of their weights has been an active area of research in recent years. One of the main approaches involves measuring the heavytailness of the empirical spectral densities (ESDs) of weight matrices. This analysis has been shown to provide insights to help diagnose whether a model is well-trained or undertrained, and has been used to guide training methods involving layer-wise hyperparameter assignment. In this paper, we address an often-overlooked challenge in estimating the heavytailness of these ESDs: the impact of the aspect ratio of weight matrices. We demonstrate that matrices of varying sizes (and aspect ratios) introduce a non-negligible bias in estimating the heavytailness of ESDs, leading to inaccurate model diagnosis and layer-wise hyperparameter assignment. To overcome this challenge, we propose FARMS (Fixed-Aspect-Ratio Matrix Subsampling), a method that normalizes the weight matrices by subsampling submatrices with a fixed aspect ratio. Instead of measuring the heavytailness of the original ESD, we measure the average ESD of these subsampled submatrices. We show that this method effectively mitigates the aspect ratio bias. We validate our approach across various optimization techniques and application domains that involve eigenspectrum analysis of weights, including image classification in computer vision (CV) models, scientific machine learning (SciML) model training, and large language model (LLM) pruning. Our results show that despite its simplicity, FARMS uniformly improves the accuracy of eigenspectrum analysis while enabling more effective layer-wise hyperparameter assignment. In one of the LLM pruning experiments, FARMS reduces the perplexity of the LLaMA-7B model by 17.3% when compared with state-of-the-art methods.



Perturbation Analysis of Singular Values in Concatenated Matrices

Shamrai, Maksym

arXiv.org Machine Learning

Concatenating matrices is a common technique for uncovering shared structures in data through singular value decomposition (SVD) and low-rank approximations. The fundamental question arises: How does the singular value spectrum of the concatenated matrix relate to the spectra of its individual components? In the present work, we develop a perturbation technique that extends classical results such as Weyl's inequality to concatenated matrices. We setup analytical bounds that quantify stability of singular values under small perturbations in submatrices. The results demonstrate that if submatrices are close in a norm, dominant singular values of the concatenated matrix remain stable enabling controlled trade-offs between accuracy and compression. These provide a theoretical basis for improved matrix clustering and compression strategies with applications in the numerical linear algebra, signal processing, and data-driven modeling.


Spectral Estimation with Free Decompression

Ameli, Siavash, van der Heide, Chris, Hodgkinson, Liam, Mahoney, Michael W.

arXiv.org Machine Learning

Computing eigenvalues of very large matrices is a critical task in many machine learning applications, including the evaluation of log-determinants, the trace of matrix functions, and other important metrics. As datasets continue to grow in scale, the corresponding covariance and kernel matrices become increasingly large, often reaching magnitudes that make their direct formation impractical or impossible. Existing techniques typically rely on matrix-vector products, which can provide efficient approximations, if the matrix spectrum behaves well. However, in settings like distributed learning, or when the matrix is defined only indirectly, access to the full data set can be restricted to only very small sub-matrices of the original matrix. In these cases, the matrix of nominal interest is not even available as an implicit operator, meaning that even matrix-vector products may not be available. In such settings, the matrix is "impalpable," in the sense that we have access to only masked snapshots of it. We draw on principles from free probability theory to introduce a novel method of "free decompression" to estimate the spectrum of such matrices. Our method can be used to extrapolate from the empirical spectral densities of small submatrices to infer the eigenspectrum of extremely large (impalpable) matrices (that we cannot form or even evaluate with full matrix-vector products). We demonstrate the effectiveness of this approach through a series of examples, comparing its performance against known limiting distributions from random matrix theory in synthetic settings, as well as applying it to submatrices of real-world datasets, matching them with their full empirical eigenspectra.