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Reconstruction of three-dimensional shapes of normal and disease-related erythrocytes from partial observations using multi-fidelity neural networks

Wen, Haizhou, Li, He, Li, Zhen

arXiv.org Artificial Intelligence

Reconstruction of 3D erythrocyte or red blood cell (RBC) morphology from partial observations, such as microscope images, is essential for understanding the physiology of RBC aging and the pathology of various RBC disorders. In this study, we propose a multi-fidelity neural network (MFNN) approach to fuse high-fidelity cross-sections of an RBC, with a morphologically similar low-fidelity reference 3D RBC shape to recover its full 3D surface. The MFNN predictor combines a convolutional neural network trained on low-fidelity reference RBC data with a feedforward neural network that captures nonlinear morphological correlations, and augments training with surface area and volume constraints for regularization in the low-fidelity branch. This approach is theoretically grounded by a topological homeomorphism between a sphere and 3D RBC surfaces, with training data generated by dissipative particle dynamics simulations of stomatocyte-discocyte-echinocyte transformation. Benchmarking across diverse RBC shapes observed in normal and aged populations, our results show that the MFNN predictor can reconstruct complex RBC morphologies with over 95% coordinate accuracy when provided with at least two orthogonal cross-sections. It is observed that informative oblique cross-sections intersecting spicule tips of echinocytes improve both local and global feature reconstruction, highlighting the value of feature-aware sampling. Our study further evaluates the influence of sampling strategies, shape dissimilarity, and noise, showing enhanced robustness under physically constrained training. Altogether, these results demonstrate the capability of MFNN to reconstruct the 3D shape of normal and aged RBCs from partial cross-sections as observed in conventional microscope images, which could facilitate the quantitative analysis of RBC morphological parameters in normal and disease-related RBC samples.



A Physics-Informed Convolutional Long Short Term Memory Statistical Model for Fluid Thermodynamics Simulations

Menicali, Luca, Grace, Andrew, Richter, David H., Castruccio, Stefano

arXiv.org Machine Learning

Fluid thermodynamics underpins atmospheric dynamics, climate science, industrial applications, and energy systems. However, direct numerical simulations (DNS) of such systems are computationally prohibitive. To address this, we present a novel physics-informed spatio-temporal surrogate model for Rayleigh-Bénard convection (RBC), a canonical example of convective fluid flow. Our approach combines convolutional neural networks for spatial feature extraction with an innovative recurrent architecture inspired by large language models, comprising a context builder and a sequence generator to capture temporal dynamics. Inference is penalized with respect to the governing partial differential equations to ensure physical interpretability. Given the sensitivity of turbulent convection to initial conditions, we quantify uncertainty using a conformal prediction framework. This model replicates key features of RBC dynamics while significantly reducing computational cost, offering a scalable alternative to DNS for long-term simulations.


Single-shot reconstruction of three-dimensional morphology of biological cells in digital holographic microscopy using a physics-driven neural network

Kim, Jihwan, Kim, Youngdo, Lee, Hyo Seung, Seo, Eunseok, Lee, Sang Joon

arXiv.org Artificial Intelligence

Recent advances in deep learning-based image reconstruction techniques have led to significant progress in phase retrieval using digital in-line holographic microscopy (DIHM). However, existing deep learning-based phase retrieval methods have technical limitations in generalization performance and three-dimensional (3D) morphology reconstruction from a single-shot hologram of biological cells. In this study, we propose a novel deep learning model, named MorpHoloNet, for single-shot reconstruction of 3D morphology by integrating physics-driven and coordinate-based neural networks. By simulating the optical diffraction of coherent light through a 3D phase shift distribution, the proposed MorpHoloNet is optimized by minimizing the loss between the simulated and input holograms on the sensor plane. Compared to existing DIHM methods that face challenges with twin image and phase retrieval problems, MorpHoloNet enables direct reconstruction of 3D complex light field and 3D morphology of a test sample from its single-shot hologram without requiring multiple phase-shifted holograms or angle scanning. The performance of the proposed MorpHoloNet is validated by reconstructing 3D morphologies and refractive index distributions from synthetic holograms of ellipsoids and experimental holograms of biological cells. The proposed deep learning model is utilized to reconstruct spatiotemporal variations in 3D translational and rotational behaviors and morphological deformations of biological cells from consecutive single-shot holograms captured using DIHM. MorpHoloNet would pave the way for advancing label-free, real-time 3D imaging and dynamic analysis of biological cells under various cellular microenvironments in biomedical and engineering fields.


A Novel Deep Learning based Model for Erythrocytes Classification and Quantification in Sickle Cell Disease

Bhatia, Manish, Meena, Balram, Rathi, Vipin Kumar, Tiwari, Prayag, Jaiswal, Amit Kumar, Ansari, Shagaf M, Kumar, Ajay, Marttinen, Pekka

arXiv.org Artificial Intelligence

The shape of erythrocytes or red blood cells is altered in several pathological conditions. Therefore, identifying and quantifying different erythrocyte shapes can help diagnose various diseases and assist in designing a treatment strategy. Machine Learning (ML) can be efficiently used to identify and quantify distorted erythrocyte morphologies. In this paper, we proposed a customized deep convolutional neural network (CNN) model to classify and quantify the distorted and normal morphology of erythrocytes from the images taken from the blood samples of patients suffering from Sickle cell disease ( SCD). We chose SCD as a model disease condition due to the presence of diverse erythrocyte morphologies in the blood samples of SCD patients. For the analysis, we used 428 raw microscopic images of SCD blood samples and generated the dataset consisting of 10, 377 single-cell images. We focused on three well-defined erythrocyte shapes, including discocytes, oval, and sickle. We used 18 layered deep CNN architecture to identify and quantify these shapes with 81% accuracy, outperforming other models. We also used SHAP and LIME for further interpretability. The proposed model can be helpful for the quick and accurate analysis of SCD blood samples by the clinicians and help them make the right decision for better management of SCD.


Combined Peak Reduction and Self-Consumption Using Proximal Policy Optimization

Peirelinck, Thijs, Hermans, Chris, Spiessens, Fred, Deconinck, Geert

arXiv.org Artificial Intelligence

Due to their decentralised and intermittent nature, market and tariff designs are challenged. In the Flemish region of Belgium the energy regulator (VREG) has recently announced a change of distribution fee design [28]. Previously, Flemish residential electricity distribution fees have been energy-based. The rise of residential photovoltaic (PV) installations and netmetering meant a reduction in income for the Distribution Network Operator (DNO). With the introduction of digital metering, the regulator takes the opportunity to introduce a capacity tariff, starting from 2023 [28]. The regulator motivates its decision by arguing that the DNO's main costs are capacity-based rather than energy-based [28]. As a result, a more cost-reflective price signal is provided to consumers. At the same time, by tying the distribution grid fees to power rather than energy consumption, the VREG encourages consumers, aiming to minizime cost, to reduce their peak power consumption. This causes an interesting application for Demand Response (DR), which we will consider in this work.


Supervised and Reinforcement Learning from Observations in Reconnaissance Blind Chess

Bertram, Timo, Fürnkranz, Johannes, Müller, Martin

arXiv.org Artificial Intelligence

In this work, we adapt a training approach inspired by the original AlphaGo system to play the imperfect information game of Reconnaissance Blind Chess. Using only the observations instead of a full description of the game state, we first train a supervised agent on publicly available game records. Next, we increase the performance of the agent through self-play with the on-policy reinforcement learning algorithm Proximal Policy Optimization. We do not use any search to avoid problems caused by the partial observability of game states and only use the policy network to generate moves when playing. With this approach, we achieve an ELO of 1330 on the RBC leaderboard, which places our agent at position 27 at the time of this writing. We see that self-play significantly improves performance and that the agent plays acceptably well without search and without making assumptions about the true game state.


Semantic Segmentation of Anaemic RBCs Using Multilevel Deep Convolutional Encoder-Decoder Network

Shahzad, Muhammad, Umar, Arif Iqbal, Shirazi, Syed Hamad, Shaikh, Israr Ahmed

arXiv.org Artificial Intelligence

Pixel-level analysis of blood images plays a pivotal role in diagnosing blood-related diseases, especially Anaemia. These analyses mainly rely on an accurate diagnosis of morphological deformities like shape, size, and precise pixel counting. In traditional segmentation approaches, instance or object-based approaches have been adopted that are not feasible for pixel-level analysis. The convolutional neural network (CNN) model required a large dataset with detailed pixel-level information for the semantic segmentation of red blood cells in the deep learning domain. In current research work, we address these problems by proposing a multi-level deep convolutional encoder-decoder network along with two state-of-the-art healthy and Anaemic-RBC datasets. The proposed multi-level CNN model preserved pixel-level semantic information extracted in one layer and then passed to the next layer to choose relevant features. This phenomenon helps to precise pixel-level counting of healthy and anaemic-RBC elements along with morphological analysis. For experimental purposes, we proposed two state-of-the-art RBC datasets, i.e., Healthy-RBCs and Anaemic-RBCs dataset. Each dataset contains 1000 images, ground truth masks, relevant, complete blood count (CBC), and morphology reports for performance evaluation. The proposed model results were evaluated using crossmatch analysis with ground truth mask by finding IoU, individual training, validation, testing accuracies, and global accuracies using a 05-fold training procedure. This model got training, validation, and testing accuracies as 0.9856, 0.9760, and 0.9720 on the Healthy-RBC dataset and 0.9736, 0.9696, and 0.9591 on an Anaemic-RBC dataset. The IoU and BFScore of the proposed model were 0.9311, 0.9138, and 0.9032, 0.8978 on healthy and anaemic datasets, respectively.


Robust Imitation Learning from Corrupted Demonstrations

Liu, Liu, Tang, Ziyang, Li, Lanqing, Luo, Dijun

arXiv.org Machine Learning

We consider offline Imitation Learning from corrupted demonstrations where a constant fraction of data can be noise or even arbitrary outliers. Classical approaches such as Behavior Cloning assumes that demonstrations are collected by an presumably optimal expert, hence may fail drastically when learning from corrupted demonstrations. We propose a novel robust algorithm by minimizing a Median-of-Means (MOM) objective which guarantees the accurate estimation of policy, even in the presence of constant fraction of outliers. Our theoretical analysis shows that our robust method in the corrupted setting enjoys nearly the same error scaling and sample complexity guarantees as the classical Behavior Cloning in the expert demonstration setting. Our experiments on continuous-control benchmarks validate that our method exhibits the predicted robustness and effectiveness, and achieves competitive results compared to existing imitation learning methods.