non-image data
Method for Generating Synthetic Data Combining Chest Radiography Images with Tabular Clinical Information Using Dual Generative Models
Kikuchi, Tomohiro, Hanaoka, Shouhei, Nakao, Takahiro, Takenaga, Tomomi, Nomura, Yukihiro, Mori, Harushi, Yoshikawa, Takeharu
The generation of synthetic medical records using Generative Adversarial Networks (GANs) is becoming crucial for addressing privacy concerns and facilitating data sharing in the medical domain. In this paper, we introduce a novel method to create synthetic hybrid medical records that combine both image and non-image data, utilizing an auto-encoding GAN (alphaGAN) and a conditional tabular GAN (CTGAN). Our methodology encompasses three primary steps: I) Dimensional reduction of images in a private dataset (pDS) using the pretrained encoder of the {\alpha}GAN, followed by integration with the remaining non-image clinical data to form tabular representations; II) Training the CTGAN on the encoded pDS to produce a synthetic dataset (sDS) which amalgamates encoded image features with non-image clinical data; and III) Reconstructing synthetic images from the image features using the alphaGAN's pretrained decoder. We successfully generated synthetic records incorporating both Chest X-Rays (CXRs) and thirteen non-image clinical variables (comprising seven categorical and six numeric variables). To evaluate the efficacy of the sDS, we designed classification and regression tasks and compared the performance of models trained on pDS and sDS against the pDS test set. Remarkably, by leveraging five times the volume of sDS for training, we achieved classification and regression results that were comparable, if slightly inferior, to those obtained using the native pDS. Our method holds promise for publicly releasing synthetic datasets without undermining the potential for secondary data usage.
Large language models improve Alzheimer's disease diagnosis using multi-modality data
Feng, Yingjie, Wang, Jun, Gu, Xianfeng, Xu, Xiaoyin, Zhang, Min
In diagnosing challenging conditions such as Alzheimer's disease (AD), imaging is an important reference. Non-imaging patient data such as patient information, genetic data, medication information, cognitive and memory tests also play a very important role in diagnosis. Effect. However, limited by the ability of artificial intelligence models to mine such information, most of the existing models only use multi-modal image data, and cannot make full use of non-image data. We use a currently very popular pre-trained large language model (LLM) to enhance the model's ability to utilize non-image data, and achieved SOTA results on the ADNI dataset.
Heterogeneous Graph Learning for Multi-modal Medical Data Analysis
Kim, Sein, Lee, Namkyeong, Lee, Junseok, Hyun, Dongmin, Park, Chanyoung
Routine clinical visits of a patient produce not only image data, but also non-image data containing clinical information regarding the patient, i.e., medical data is multi-modal in nature. Such heterogeneous modalities offer different and complementary perspectives on the same patient, resulting in more accurate clinical decisions when they are properly combined. However, despite its significance, how to effectively fuse the multi-modal medical data into a unified framework has received relatively little attention. In this paper, we propose an effective graph-based framework called HetMed (Heterogeneous Graph Learning for Multi-modal Medical Data Analysis) for fusing the multi-modal medical data. Specifically, we construct a multiplex network that incorporates multiple types of non-image features of patients to capture the complex relationship between patients in a systematic way, which leads to more accurate clinical decisions. Extensive experiments on various real-world datasets demonstrate the superiority and practicality of HetMed. The source code for HetMed is available at https://github.com/Sein-Kim/Multimodal-Medical.
Auto-outlier Fusion Technique for Chest X-ray classification with Multi-head Attention Mechanism
A chest X-ray is one of the most widely available radiological examinations for diagnosing and detecting various lung illnesses. The National Institutes of Health (NIH) provides an extensive database, ChestX-ray8 and ChestXray14, to help establish a deep learning community for analysing and predicting lung diseases. ChestX-ray14 consists of 112,120 frontal-view X-ray images of 30,805 distinct patients with text-mined fourteen disease image labels, where each image has multiple labels and has been utilised in numerous research in the past. To our current knowledge, no previous study has investigated outliers and multi-label impact for a single X-ray image during the preprocessing stage. The effect of outliers is mitigated in this paper by our proposed auto-outlier fusion technique. The image label is regenerated by concentrating on a particular factor in one image. The final cleaned dataset will be used to compare the mechanisms of multi-head self-attention and multi-head attention with generalised max-pooling.
Deep Learning Image Recognition for Non-images
Powerful deep learning algorithms open an opportunity for solving non-image Machine Learning (ML) problems by transforming these problems to into the image recognition problems. The CPC-R algorithm presented in this chapter converts non-image data into images by visualizing non-image data. Then deep learning CNN algorithms solve the learning problems on these images. The design of the CPC-R algorithm allows preserving all high-dimensional information in 2-D images. The use of pair values mapping instead of single value mapping used in the alternative approaches allows encoding each n-D point with 2 times fewer visual elements.