Techniques for feedforward networks (FFNs) and convolutional networks (CNNs) are frequently reused across families, but the relationship between the underlying model classes is rarely made explicit. We introduce a unified node-level formalization with tensor-valued activations and show that generalized feedforward networks form a strict subset of generalized convolutional networks. Motivated by the mismatch in per-input parameterization between the two families, we propose model projection, a parameter-efficient transfer learning method for CNNs that freezes pretrained per-input-channel filters and learns a single scalar gate for each (output channel, input channel) contribution. Projection keeps all convolutional layers adaptable to downstream tasks while substantially reducing the number of trained parameters in convolutional layers. We prove that projected nodes take the generalized FFN form, enabling projected CNNs to inherit feedforward techniques that do not rely on homogeneous layer inputs. Experiments across multiple ImageNet-pretrained backbones and several downstream image classification datasets show that model projection is a strong transfer learning baseline under simple training recipes.

PIBT is a rule-based Multi-Agent Path Finding (MAPF) solver, widely used as a low-level planner or action sampler in many state-of-the-art approaches. Its primary advantage lies in its exceptional speed, enabling action selection for thousands of agents within milliseconds by considering only the immediate next timestep. However, this short-horizon design leads to poor performance in scenarios where agents have orientation and must perform time-consuming rotation actions. In this work, we present an enhanced version of PIBT that addresses this limitation by incorporating multi-action operations. We detail the modifications introduced to improve PIBT's performance while preserving its hallmark efficiency. Furthermore, we demonstrate how our method, when combined with graph-guidance technique and large neighborhood search optimization, achieves state-of-the-art performance in the online LMAPF-T setting.

Diagnosing rare diseases requires linking gene findings with often unstructured reference text. Current pipelines collect many candidate genes, but clinicians still spend a lot of time filtering false positives and combining evidence from papers and databases. A key challenge is language: phenotype descriptions and inheritance patterns are written in prose, not fully captured by tables. Large language models (LLMs) can read such text, but clinical use needs grounding in citable knowledge and stable, repeatable behavior. We explore a knowledge-grounded and language-aware reranking layer on top of a high-recall first-stage pipeline. The goal is to improve precision and explainability, not to replace standard bioinformatics steps. We use expert-built context and a consensus method to reduce LLM variability, producing shorter, better-justified gene lists for expert review. LA-MARRVEL achieves the highest accuracy, outperforming other methods -- including traditional bioinformatics diagnostic tools (AI-MARRVEL, Exomiser, LIRICAL) and naive large language models (e.g., Anthropic Claude) -- with an average Recall@5 of 94.10%, a +3.65 percentage-point improvement over AI-MARRVEL. The LLM-generated reasoning provides clear prose on phenotype matching and inheritance patterns, making clinical review faster and easier. LA-MARRVEL has three parts: expert-engineered context that enriches phenotype and disease information; a ranked voting algorithm that combines multiple LLM runs to choose a consensus ranked gene list; and the AI-MARRVEL pipeline that provides first-stage ranks and gene annotations, already known as a state-of-the-art method in Rare Disease Diagnosis on BG, DDD, and UDN cohorts. The online AI-MARRVEL includes LA-MARRVEL as an LLM feature at https://ai.marrvel.org . We evaluate LA-MARRVEL on three datasets from independent cohorts of real-world diagnosed patients.

Large language models (LLMs) exhibit strong semantic understanding, yet struggle when user instructions involve ambiguous or conceptually misaligned terms. We propose the Language Graph Model (LGM) to enhance conceptual clarity by extracting meta-relations-inheritance, alias, and composition-from natural language. The model further employs a reflection mechanism to validate these meta-relations. Leveraging a Concept Iterative Retrieval Algorithm, these relations and related descriptions are dynamically supplied to the LLM, improving its ability to interpret concepts and generate accurate responses. Unlike conventional Retrieval-Augmented Generation (RAG) approaches that rely on extended context windows, our method enables large language models to process texts of any length without the need for truncation. Experiments on standard benchmarks demonstrate that the LGM consistently outperforms existing RAG baselines.

Variant and gene interpretation are fundamental to personalized medicine and translational biomedicine. However, traditional approaches are manual and labor-intensive. Generative language models (LMs) can facilitate this process, accelerating the translation of fundamental research into clinically-actionable insights. While existing benchmarks have attempted to quantify the capabilities of LMs for interpreting scientific data, these studies focus on narrow tasks that do not translate to real-world research. To meet these challenges, we introduce CGBench, a robust benchmark that tests reasoning capabilities of LMs on scientific publications. CGBench is built from ClinGen, a resource of expert-curated literature interpretations in clinical genetics. CGBench measures the ability to 1) extract relevant experimental results following precise protocols and guidelines, 2) judge the strength of evidence, and 3) categorize and describe the relevant outcome of experiments. We test 8 different LMs and find that while models show promise, substantial gaps exist in literature interpretation, especially on fine-grained instructions. Reasoning models excel in fine-grained tasks but non-reasoning models are better at high-level interpretations. Finally, we measure LM explanations against human explanations with an LM judge approach, revealing that models often hallucinate or misinterpret results even when correctly classifying evidence. CGBench reveals strengths and weaknesses of LMs for precise interpretation of scientific publications, opening avenues for future research in AI for clinical genetics and science more broadly.

A prevailing trend in neural network research suggests that model performance improves with increasing depth and capacity - often at the cost of integrability and efficiency. In this paper, we propose a strategy to optimize small, deployable models by enhancing their capabilities through structured knowledge inheritance. We introduce Hereditary Knowledge Transfer (HKT), a biologically inspired framework for modular and selective transfer of task-relevant features from a larger, pretrained parent network to a smaller child model. Unlike standard knowledge distillation, which enforces uniform imitation of teacher outputs, HKT draws inspiration from biological inheritance mechanisms - such as memory RNA transfer in planarians - to guide a multi-stage process of feature transfer. Neural network blocks are treated as functional carriers, and knowledge is transmitted through three biologically motivated components: Extraction, Transfer, and Mixture (ETM). A novel Genetic Attention (GA) mechanism governs the integration of inherited and native representations, ensuring both alignment and selectivity. We evaluate HKT across diverse vision tasks, including optical flow (Sintel, KITTI), image classification (CIFAR-10), and semantic segmentation (LiTS), demonstrating that it significantly improves child model performance while preserving its compactness. The results show that HKT consistently outperforms conventional distillation approaches, offering a general-purpose, interpretable, and scalable solution for deploying high-performance neural networks in resource-constrained environments.

We formally introduce an inheritance mechanism for the Shape Expressions language (ShEx). It is inspired by inheritance in object-oriented programming languages, and provides similar advantages such as reuse, modularity, and more flexible data modelling. Using an example, we explain the main features of the inheritance mechanism. We present its syntax and formal semantics. The semantics is an extension of the semantics of ShEx 2.1. It also directly yields a validation algorithm as an extension of the previous ShEx validation algorithms, while maintaining the same algorithmic complexity.

Developing robotic agents that can generalize across diverse environments while continually evolving their behaviors is a core challenge in AI and robotics. The difficulties lie in solving increasingly complex tasks and ensuring agents can continue learning without converging on narrow, specialized solutions. Quality Diversity (QD) [1, 2] methods effectively foster diversity but often rely on trial and error, where the path to a final solution can be convoluted, leading to inefficiencies and uncertainty. Our approach draws inspiration from nature's inheritance process, where offspring not only receive but also build upon the knowledge of their predecessors. Similarly, our agents inherit distilled behaviors from previous generations, allowing them to adapt and continue learning efficiently, eventually surpassing their predecessors. This natural knowledge transfer reduces randomness, guiding exploration toward more meaningful learning without manual intervention like reward shaping or task descriptors. What sets our method apart is that it offers a straightforward, evolution-inspired way to consolidate and progress, avoiding the need for manually defined styles or gradient editing [3, 4] to prevent forgetting. The agent's ability to retain and refine skills is driven by a blend of IL and RL, naturally passing down essential behaviors while implicitly discarding inferior ones. We introduce Parental Guidance (PG-1) which makes the following contributions: 1. Distributed Evolution Framework: We propose a framework that distributes the evolution process across multiple compute instances, efficiently scheduling and analyzing evolution.

Large Language Models (LLMs) are rapidly gaining enormous popularity in recent years. However, the training of LLMs has raised significant privacy and legal concerns, particularly regarding the inclusion of copyrighted materials in their training data without proper attribution or licensing, which falls under the broader issue of data misappropriation. In this article, we focus on a specific problem of data misappropriation detection, namely, to determine whether a given LLM has incorporated data generated by another LLM. To address this issue, we propose embedding watermarks into the copyrighted training data and formulating the detection of data misappropriation as a hypothesis testing problem. We develop a general statistical testing framework, construct a pivotal statistic, determine the optimal rejection threshold, and explicitly control the type I and type II errors. Furthermore, we establish the asymptotic optimality properties of the proposed tests, and demonstrate its empirical effectiveness through intensive numerical experiments.

Object-Oriented Programming (OOP) has become a crucial paradigm for managing the growing complexity of modern software systems, particularly in fields like machine learning, deep learning, large language models (LLM), and data analytics. This work provides a comprehensive introduction to the integration of OOP techniques within these domains, with a focus on improving code modularity, maintainability, and scalability. We begin by outlining the evolution of computing and the rise of OOP, followed by an in-depth discussion of key OOP principles such as encapsulation, inheritance, polymorphism, and abstraction. The practical application of these principles is demonstrated using Python, a widely adopted language in AI and data science. Furthermore, we examine how design patterns and modular programming can be employed to enhance the structure and efficiency of machine learning systems. In subsequent sections, we apply these OOP concepts to real-world AI tasks, including the encapsulation of preprocessing workflows, machine learning model training, and evaluation. Detailed examples illustrate how OOP can be used to build reusable, scalable machine learning systems while maintaining code clarity and reducing redundancy.This work is intended to serve as a bridge for both beginners and experienced developers, equipping them with the necessary knowledge to apply OOP methodologies in AI-driven projects, ultimately fostering the development of more robust and maintainable systems.