Verification of model outputs is rapidly emerging as a key primitive for both training and real-world deployment of large language models (LLMs). In practice, this often involves using imperfect LLM judges and reward models since ground truth acquisition can be time-consuming and expensive. We introduce Fully Unsupervised Score Ensembling (FUSE), a method for improving verification quality by ensembling verifiers without access to ground truth correctness labels. The key idea behind FUSE is to control conditional dependencies between verifiers in a manner that improves the unsupervised performance of a class of spectral algorithms from the ensembling literature. Despite requiring zero ground truth labels, FUSE typically matches or improves upon semi-supervised alternatives in test-time scaling experiments with diverse sets of generator models, verifiers, and benchmarks. In particular, we validate our method on both conventional academic benchmarks such as GPQA Diamond and on frontier, unsaturated benchmarks such as Humanity's Last Exam and IMO Shortlist questions.

Bayesian experimental design (BED) for complex physical systems is often limited by the nested inference required to estimate the expected information gain (EIG) or its gradients. Each outer sample induces a different posterior, creating a large and heterogeneous set of inference targets. Existing methods have to sacrifice either accuracy or efficiency: they either perform per-outer-sample posterior inference, which yields higher fidelity but at prohibitive computational cost, or amortize the inner inference across all outer samples for computational reuse, at the risk of degraded accuracy under posterior heterogeneity. To improve accuracy and maintain cost at the amortized level, we propose a grouped geometric pooled posterior framework that partitions outer samples into groups and constructs a pooled proposal for each group. While such grouping strategy would normally require generating separate proposal samples for different groups, our tailored ensemble Kalman inversion (EKI) formulation generates these samples without extra forward-model evaluation cost. We also introduce a conservative diagnostic to assess importance-sampling quality to guide grouping. This grouping strategy improves within-group proposal-target alignment, yielding more accurate and stable estimators while keeping the cost comparable to amortized approaches. We evaluate the performance of our method on both Gaussian-linear and high-dimensional network-based model discrepancy calibration problems.

Decision-makers rely on weather forecasts to plant crops, manage wildfires, allocate water and energy, and prepare for weather extremes. Today, such forecasts enjoy unprecedented accuracy out to two weeks thanks to steady advances in physics-based dynamical models and data-driven artificial intelligence (AI) models. However, model skill drops precipitously at subseasonal timescales (2 - 6 weeks ahead), due to compounding errors and persistent biases. To counter this degradation, we introduce probabilistic bias correction (PBC), a machine learning framework that substantially reduces systematic error by learning to correct historical probabilistic forecasts. When applied to the leading dynamical and AI models from the European Centre for Medium-Range Weather Forecasts (ECMWF), PBC doubles the subseasonal skill of the AI Forecasting System and improves the skill of the operationally-debiased dynamical model for 91% of pressure, 92% of temperature, and 98% of precipitation targets. We designed PBC for operational deployment, and, in ECMWF's 2025 real-time forecasting competition, its global forecasts placed first for all weather variables and lead times, outperforming the dynamical models from six operational forecasting centers, an international dynamical multi-model ensemble, ECMWF's AI Forecasting System, and the forecasting systems of 34 teams worldwide. These probabilistic skill gains translate into more accurate prediction of extreme events and have the potential to improve agricultural planning, energy management, and disaster preparedness in vulnerable communities.

AI-based weather forecasting now rivals traditional physics-based ensembles, but state-of-the-art (SOTA) models rely on specialized architectures and massive computational budgets, creating a high barrier to entry. We demonstrate that such complexity is unnecessary for frontier performance. We introduce U-Cast, a probabilistic forecaster built on a standard U-Net backbone trained with a simple recipe: deterministic pre-training on Mean Absolute Error followed by short probabilistic fine-tuning on the Continuous Ranked Probability Score (CRPS) using Monte Carlo Dropout for stochasticity. As a result, our model matches or exceeds the probabilistic skill of GenCast and IFS ENS at 1.5$^\circ\$ resolution while reducing training compute by over 10$\times$ compared to leading CRPS-based models and inference latency by over 10$\times$ compared to diffusion-based models. U-Cast trains in under 12 H200 GPU-days and generates a 60-step ensemble forecast in 11 seconds. These results suggest that scalable, general-purpose architectures paired with efficient training curricula can match complex domain-specific designs at a fraction of the cost, opening the training of frontier probabilistic weather models to the broader community. Our code is available at: https://github.com/Rose-STL-Lab/u-cast.

In Part I of this series, we established a rigorous mathematical isomorphism between ant colony decision-making and random forest learning, demonstrating that variance reduction through decorrelation is a universal principle shared by biological and computational ensembles. Here we turn to the complementary mechanism: bias reduction through adaptive weighting. Just as boosting algorithms sequentially focus on difficult instances, ant colonies dynamically amplify successful foraging paths through pheromone-mediated recruitment. We prove that these processes are mathematically isomorphic, establishing that the fundamental theorem of weak learnability has a direct analog in colony decision-making. We develop a formal mapping between AdaBoost's adaptive reweighting and ant recruitment dynamics, show that the margin theory of boosting corresponds to the stability of quorum decisions, and demonstrate through comprehensive simulation that ant colonies implementing adaptive recruitment achieve the same bias-reduction benefits as boosting algorithms. This completes a unified theory of ensemble intelligence, revealing that both variance reduction (Part I) and bias reduction (Part II) are manifestations of the same underlying mathematical principles governing collective intelligence in biological and computational systems.

The use of transfer learning within Bayesian optimization addresses the disadvantages of the so-called \textit{cold start} problem by using source data to aid in the optimization of a target problem. We present a method that leverages an ensemble of surrogate models using transfer learning and integrates it in a constrained Bayesian optimization framework. We identify challenges particular to aircraft design optimization related to heterogeneous design variables and constraints. We propose the use of a partial-least-squares dimension reduction algorithm to address design space heterogeneity, and a \textit{meta} data surrogate selection method to address constraint heterogeneity. Numerical benchmark problems and an aircraft conceptual design optimization problem are used to demonstrate the proposed methods. Results show significant improvement in convergence in early optimization iterations compared to standard Bayesian optimization, with improved prediction accuracy for both objective and constraint surrogate models.

We prove that the persistence diagram of the sublevel set filtration of the quadratic form f(x) = x^T M x restricted to the unit sphere S^{n-1} is analytically determined by the eigenvalues of the symmetric matrix M. By Morse theory, the diagram has exactly n-1 finite bars, with the k-th bar living in homological dimension k-1 and having length equal to the k-th eigenvalue spacing s_k = λ_{k+1} - λ_k. This identification transfers random matrix theory (RMT) universality to persistence diagram universality: for matrices drawn from the Gaussian Orthogonal Ensemble (GOE), we derive the closed-form persistence entropy PE = log(8n/π) - 1, and verify numerically that the coefficient of variation of persistence statistics decays as n^{-0.6}. Different random matrix ensembles (GOE, GUE, Wishart) produce distinct universal persistence diagrams, providing topological fingerprints of RMT universality classes. As a practical consequence, we show that persistence entropy outperforms the standard level spacing ratio \langle r \rangle for discriminating GOE from GUE matrices (AUC 0.978 vs. 0.952 at n = 100, non-overlapping bootstrap 95% CIs), and detects global spectral perturbations in the Rosenzweig-Porter model to which \langle r \rangle is blind. These results establish persistence entropy as a new spectral diagnostic that captures complementary information to existing RMT tools.

Machine learning models of chemical bioactivity are increasingly used for prioritizing a small number of compounds in virtual screening libraries for experimental follow-up. In these applications, assessing model accuracy by early hit enrichment such as Positive Predicted Value (PPV) calculated for top N hits (PPV@N) is more appropriate and actionable than traditional global metrics such as AUC. We present KANEL, an ensemble workflow that combines interpretable Kolmogorov-Arnold Networks (KANs) with XGBoost, random forest, and multilayer perceptron models trained on complementary molecular representations (LillyMol descriptors, RDKit-derived descriptors, and Morgan fingerprints). Across five public PubChem BioAssay datasets (AIDs 485314, 485341, 504466, 624202, and 651820), Optuna-optimized weighted ensembles consistently outperformed the best single model in PPV@128 by 0.06-0.12

Probabilistic forecasting provides a principled framework for uncertainty quantification in dynamical systems by representing predictions as probability distributions rather than deterministic trajectories. However, existing forecasting approaches, whether physics-based or neural-network-based, remain fundamentally trajectory-oriented: predictive distributions are usually accessed through ensembles or sampling, rather than evolved directly as dynamical objects. A distribution-to-distribution (D2D) neural probabilistic forecasting framework is developed to operate directly on predictive distributions. The framework introduces a distributional encoding and decoding structure around a replaceable neural forecasting module, using kernel mean embeddings to represent input distributions and mixture density networks to parameterise output predictive distributions. This design enables recursive propagation of predictive uncertainty within a unified end-to-end neural architecture, with model training and evaluation carried out directly in terms of probabilistic forecast skill. The framework is demonstrated on the Lorenz63 chaotic dynamical system. Results show that the D2D model captures nontrivial distributional evolution under nonlinear dynamics, produces skillful probabilistic forecasts without explicit ensemble simulation, and remains competitive with, and in some cases outperforms, a simplified perfect model benchmark. These findings point to a new paradigm for probabilistic forecasting, in which predictive distributions are learned and evolved directly rather than reconstructed indirectly through ensemble-based uncertainty propagation.

Social insect colonies and ensemble machine learning methods represent two of the most successful examples of decentralized information processing in nature and computation respectively. Here we develop a rigorous mathematical framework demonstrating that ant colony decision-making and random forest learning are isomorphic under a common formalism of \textbf{stochastic ensemble intelligence}. We show that the mechanisms by which genetically identical ants achieve functional differentiation -- through stochastic response to local cues and positive feedback -- map precisely onto the bootstrap aggregation and random feature subsampling that decorrelate decision trees. Using tools from Bayesian inference, multi-armed bandit theory, and statistical learning theory, we prove that both systems implement identical variance reduction strategies through decorrelation of identical units. We derive explicit mappings between ant recruitment rates and tree weightings, pheromone trail reinforcement and out-of-bag error estimation, and quorum sensing and prediction averaging. This isomorphism suggests that collective intelligence, whether biological or artificial, emerges from a universal principle: \textbf{randomized identical agents + diversity-enforcing mechanisms $\rightarrow$ emergent optimality}.