cough classification
CoughViT: A Self-Supervised Vision Transformer for Cough Audio Representation Learning
Luong, Justin, Xue, Hao, Salim, Flora D.
Physicians routinely assess respiratory sounds during the diagnostic process, providing insight into the condition of a patient's airways. In recent years, AI-based diagnostic systems operating on respiratory sounds, have demonstrated success in respiratory disease detection. These systems represent a crucial advancement in early and accessible diagnosis which is essential for timely treatment. However, label and data scarcity remain key challenges, especially for conditions beyond COVID-19, limiting diagnostic performance and reliable evaluation. In this paper, we propose CoughViT, a novel pre-training framework for learning general-purpose cough sound representations, to enhance diagnostic performance in tasks with limited data. To address label scarcity, we employ masked data modelling to train a feature encoder in a self-supervised learning manner. We evaluate our approach against other pre-training strategies on three diagnostically important cough classification tasks. Experimental results show that our representations match or exceed current state-of-the-art supervised audio representations in enhancing performance on downstream tasks.
Leveraging cough sounds to optimize chest x-ray usage in low-resource settings
Philip, Alexander, Chawla, Sanya, Jover, Lola, Kafentzis, George P., Brew, Joe, Saraf, Vishakh, Vijayan, Shibu, Small, Peter, Chaccour, Carlos
Chest X-ray is a commonly used tool during triage, diagnosis and management of respiratory diseases. In resource-constricted settings, optimizing this resource can lead to valuable cost savings for the health care system and the patients as well as to and improvement in consult time. We used prospectively-collected data from 137 patients referred for chest X-ray at the Christian Medical Center and Hospital (CMCH) in Purnia, Bihar, India. Each patient provided at least five coughs while awaiting radiography. Collected cough sounds were analyzed using acoustic AI methods. Cross-validation was done on temporal and spectral features on the cough sounds of each patient. Features were summarized using standard statistical approaches. Three models were developed, tested and compared in their capacity to predict an abnormal result in the chest X-ray. All three methods yielded models that could discriminate to some extent between normal and abnormal with the logistic regression performing best with an area under the receiver operating characteristic curves ranging from 0.7 to 0.78. Despite limitations and its relatively small sample size, this study shows that AI-enabled algorithms can use cough sounds to predict which individuals presenting for chest radiographic examination will have a normal or abnormal results. These results call for expanding this research given the potential optimization of limited health care resources in low- and middle-income countries.
Harnessing Smartwatch Microphone Sensors for Cough Detection and Classification
Jaiswal, Pranay, Lone, Haroon R.
This study investigates the potential of using smartwatches with built-in microphone sensors for monitoring coughs and detecting various cough types. We conducted a study involving 32 participants and collected 9 hours of audio data in a controlled manner. Afterward, we processed this data using a structured approach, resulting in 223 positive cough samples. We further improved the dataset through augmentation techniques and employed a specialized 1D CNN model. This model achieved an impressive accuracy rate of 98.49% while non-walking and 98.2% while walking, showing smartwatches can detect cough. Moreover, our research successfully identified four distinct types of coughs using clustering techniques.
Federated Few-shot Learning for Cough Classification with Edge Devices
Hoang, Ngan Dao, Tran-Anh, Dat, Luong, Manh, Tran, Cong, Pham, Cuong
Automatically classifying cough sounds is one of the most critical tasks for the diagnosis and treatment of respiratory diseases. However, collecting a huge amount of labeled cough dataset is challenging mainly due to high laborious expenses, data scarcity, and privacy concerns. In this work, our aim is to develop a framework that can effectively perform cough classification even in situations when enormous cough data is not available, while also addressing privacy concerns. Specifically, we formulate a new problem to tackle these challenges and adopt few-shot learning and federated learning to design a novel framework, termed F2LCough, for solving the newly formulated problem. We illustrate the superiority of our method compared with other approaches on COVID-19 Thermal Face & Cough dataset, in which F2LCough achieves an average F1-Score of 86%. Our results show the feasibility of few-shot learning combined with federated learning to build a classification model of cough sounds. This new methodology is able to classify cough sounds in data-scarce situations and maintain privacy properties. The outcomes of this work can be a fundamental framework for building support systems for the detection and diagnosis of cough-related diseases.
Automatic Tuberculosis and COVID-19 cough classification using deep learning
Pahar, Madhurananda, Klopper, Marisa, Reeve, Byron, Warren, Rob, Theron, Grant, Diacon, Andreas, Niesler, Thomas
We present a deep learning based automatic cough classifier which can discriminate tuberculosis (TB) coughs from COVID-19 coughs and healthy coughs. Both TB and COVID-19 are respiratory diseases, contagious, have cough as a predominant symptom and claim thousands of lives each year. The cough audio recordings were collected at both indoor and outdoor settings and also uploaded using smartphones from subjects around the globe, thus containing various levels of noise. This cough data include 1.68 hours of TB coughs, 18.54 minutes of COVID-19 coughs and 1.69 hours of healthy coughs from 47 TB patients, 229 COVID-19 patients and 1498 healthy patients and were used to train and evaluate a CNN, LSTM and Resnet50. These three deep architectures were also pre-trained on 2.14 hours of sneeze, 2.91 hours of speech and 2.79 hours of noise for improved performance. The class-imbalance in our dataset was addressed by using SMOTE data balancing technique and using performance metrics such as F1-score and AUC. Our study shows that the highest F1-scores of 0.9259 and 0.8631 have been achieved from a pre-trained Resnet50 for two-class (TB vs COVID-19) and three-class (TB vs COVID-19 vs healthy) cough classification tasks, respectively. The application of deep transfer learning has improved the classifiers' performance and makes them more robust as they generalise better over the cross-validation folds. Their performances exceed the TB triage test requirements set by the world health organisation (WHO). The features producing the best performance contain higher order of MFCCs suggesting that the differences between TB and COVID-19 coughs are not perceivable by the human ear. This type of cough audio classification is non-contact, cost-effective and can easily be deployed on a smartphone, thus it can be an excellent tool for both TB and COVID-19 screening.
TB or not TB? Acoustic cough analysis for tuberculosis classification
Frost, Geoffrey, Theron, Grant, Niesler, Thomas
In this work, we explore recurrent neural network architectures for tuberculosis (TB) cough classification. In contrast to previous unsuccessful attempts to implement deep architectures in this domain, we show that a basic bidirectional long short-term memory network (BiLSTM) can achieve improved performance. In addition, we show that by performing greedy feature selection in conjunction with a newly-proposed attention-based architecture that learns patient invariant features, substantially better generalisation can be achieved compared to a baseline and other considered architectures. Furthermore, this attention mechanism allows an inspection of the temporal regions of the audio signal considered to be important for classification to be performed. Finally, we develop a neural style transfer technique to infer idealised inputs which can subsequently be analysed. We find distinct differences between the idealised power spectra of TB and non-TB coughs, which provide clues about the origin of the features in the audio signal.