Autoencoders are widely used for dimensionality reduction, based on the assumption that high-dimensional data lies on low-dimensional manifolds. Regularized autoencoders aim to preserve manifold geometry during dimensionality reduction, but existing approaches often suffer from non-injective mappings and overly rigid constraints that limit their effectiveness and robustness. In this work, we identify encoder non-injectivity as a core bottleneck that leads to poor convergence and distorted latent representations. To ensure robustness across data distributions, we formalize the concept of admissible regularization and provide sufficient conditions for its satisfaction. In this work, we propose the Bi-Lipschitz Autoencoder (BLAE), which introduces two key innovations: (1) an injective regularization scheme based on a separation criterion to eliminate pathological local minima, and (2) a bi-Lipschitz relaxation that preserves geometry and exhibits robustness to data distribution drift. Empirical results on diverse datasets show that BLAE consistently outperforms existing methods in preserving manifold structure while remaining resilient to sampling sparsity and distribution shifts. Code is available at https://github.com/qipengz/BLAE.

Sparse identification of nonlinear dynamics (SINDy) has been widely used to discover the governing equations of a dynamical system from data. It uses sparse regression techniques to identify parsimonious models of unknown systems from a library of candidate functions. Therefore, it relies on the assumption that the dynamics are sparsely represented in the coordinate system used. To address this limitation, one seeks a coordinate transformation that provides reduced coordinates capable of reconstructing the original system. Recently, SINDy autoencoders have extended this idea by combining sparse model discovery with autoencoder architectures to learn simplified latent coordinates together with parsimonious governing equations. A central challenge in this framework is robustness to measurement error. Inspired by noise-separating neural network structures, we incorporate a noise-separation module into the SINDy autoencoder architecture, thereby improving robustness and enabling more reliable identification of noisy dynamical systems. Numerical experiments on the Lorenz system show that the proposed method recovers interpretable latent dynamics and accurately estimates the measurement noise from noisy observations.

Generative modeling of three-dimensional (3D) molecules is a fundamental yet challenging problem in drug discovery and materials science. Existing approaches typically represent molecules as 3D graphs and co-generate discrete atom types with continuous atomic coordinates, leading to intrinsic learning difficulties such as heterogeneous modality entanglement and geometry-chemistry coherence constraints. We propose VecMol, a paradigm-shifting framework that reimagines molecular representation by modeling 3D molecules as continuous vector fields over Euclidean space, where vectors point toward nearby atoms and implicitly encode molecular structure. The vector field is parameterized by a neural field and generated using a latent diffusion model, avoiding explicit graph generation and decoupling structure learning from discrete atom instantiation. Experiments on the QM9 and GEOM-Drugs benchmarks validate the feasibility of this novel approach, suggesting vector-field-based representations as a promising new direction for 3D molecular generation.

Heavy-tailed distributions are ubiquitous in real-world data, where rare but extreme events dominate risk and variability. However, standard Variational Autoencoders (VAEs) employ simple decoder distributions (e.g., Gaussian) that fail to capture heavy-tailed behavior, while existing heavy-tail-aware extensions remain restricted to predefined parametric families whose tail behavior is fixed a priori. We propose the Phase-Type Variational Autoencoder (PH-VAE), whose decoder distribution is a latent-conditioned Phase-Type (PH) distribution defined as the absorption time of a continuous-time Markov chain (CTMC). This formulation composes multiple exponential time scales, yielding a flexible and analytically tractable decoder that adapts its tail behavior directly from the observed data. Experiments on synthetic and real-world benchmarks demonstrate that PH-VAE accurately recovers diverse heavy-tailed distributions, significantly outperforming Gaussian, Student-t, and extreme-value-based VAE decoders in modeling tail behavior and extreme quantiles. In multivariate settings, PH-VAE captures realistic cross-dimensional tail dependence through its shared latent representation. To our knowledge, this is the first work to integrate Phase-Type distributions into deep generative modeling, bridging applied probability and representation learning.

We perform a wide variety of experiments and demonstrate that OST outperforms the existing algorithms in the low-shot scenario. On most datasets the method also presents a comparable accuracy with a single training example to the accuracy obtained by the other methods for the entire set of domainA images.

SynCx outperforms or is strongly competitive with current models for unsupervised object discovery.