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Coarse-graining conformational dynamics with multi-dimensional generalized Langevin equation: how, when, and why

Xie, Pinchen, Qiu, Yunrui, E, Weinan

arXiv.org Artificial Intelligence

A data-driven ab initio generalized Langevin equation (AIGLE) approach is developed to learn and simulate high-dimensional, heterogeneous, coarse-grained conformational dynamics. Constrained by the fluctuation-dissipation theorem, the approach can build coarse-grained models in dynamical consistency with all-atom molecular dynamics. We also propose practical criteria for AIGLE to enforce long-term dynamical consistency. Case studies of a toy polymer, with 20 coarse-grained sites, and the alanine dipeptide, with two dihedral angles, elucidate why one should adopt AIGLE or its Markovian limit for modeling coarse-grained conformational dynamics in practice.


UrbanTwin: seeing double for sustainability

AIHub

A consortium of Swiss research institutes has begun working on UrbanTwin to make an AI-driven, ecologically-sensitive model of the energy, water and waste systems of the town of Aigle to help boost sustainability. Aigle has been chosen due to its size and because it has an extensive range of water sources and includes very detailed energy monitoring infrastructure previously developed by the Energy Center of EPFL. The UrbanTwin team aims to develop and validate a holistic tool to support decision-makers in achieving environmental goals, such as the Energy Strategy 2050 and the vision of climate-adaptive "sponge cities". The tool will be based on a detailed model of critical urban infrastructure, such as energy, water, buildings, and mobility, accurately simulating the evolution of these interlinked infrastructures under various climate scenarios and assessing the effectiveness of climate-change-related actions. "Urban areas are responsible for 75% of greenhouse gas emissions while rising temperatures significantly impact their liveability. They represent a natural integrator of several systems, including energy, water, buildings, and transport. So, they represent the ideal setting for implementing a coordinated, multi-sectoral response to climate changes leveraging digitalization as a systemic approach."