Recently, variational approximations such as the mean field approximation have received much interest. We extend the standard mean field method by using an approximating distribution that factorises into cluster potentials. This includes undirected graphs, directed acyclic graphs and junction trees. We derive generalized mean field equations to optimize the cluster potentials. We show that the method bridges the gap between the standard mean field approximation and the exact junction tree algorithm. In addition, we address the problem of how to choose the graphical structure of the approximating distribution. From the generalised mean field equations we derive rules to simplify the structure of the approximating distribution in advance without affecting the quality of the approximation. We also show how the method fits into some other variational approximations that are currently popular.

Iterative Proportional Fitting (IPF), combined with EM, is commonly used as an algorithm for likelihood maximization in undirected graphical models. In this paper, we present two iterative algorithms that generalize upon IPF. The first one is for likelihood maximization in discrete chain factor graphs, which we define as a wide class of discrete variable models including undirected graphical models and Bayesian networks, but also chain graphs and sigmoid belief networks. The second one is for conditional likelihood maximization in standard undirected models and Bayesian networks. In both algorithms, the iteration steps are expressed in closed form. Numerical simulations show that the algorithms are competitive with state of the art methods.

The E-step boils down to computing probabilities of the hidden variables given the observed variables (evidence) and current set of parameters. The M-step then, given these probabilities, yields a new set of parameters guaranteed to increase the likelihood. In Bayesian networks, that will be the focus of this article, the M-step is usually relatively straightforward. A complication may arise in the E-step, when computing the probability of the hidden variables given the evidence becomes intractable. An often used approach is to replace the exact yet intractable inference in the E step with approximate inference, either through sampling or using a deterministic variational method. The use of a "mean-field" variational method in this context leads to an algorithm known as variational EM and can be given theinterpretation of minimizing a free energy with respect to both a tractable approximate distribution (approximate E-step) and the parameters (M-step) [2]. Loopy belief propagation [3] and variants thereof, such as generalized belief propagation [4]and expectation propagation [5], have become popular alternatives to the "mean-field" variational approaches, often yielding somewhat better approximations. Andindeed, they can and have been applied for approximate inference in the E-step of the EM algorithm (see e.g.

We consider loopy belief propagation for approximate inference in probabilistic graphical models. A limitation of the standard algorithm is that clique marginals are computed as if there were no loops in the graph. To overcome this limitation, we introduce fractional belief propagation. Fractional belief propagation is formulated in terms of a family of approximate free energies, which includes the Bethe free energy and the naive mean-field free as special cases. Using the linear response correction of the clique marginals, the scale parameters can be tuned. Simulation results illustrate the potential merits of the approach.

We consider loopy belief propagation for approximate inference in probabilistic graphical models. A limitation of the standard algorithm is that clique marginals are computed as if there were no loops in the graph. To overcome this limitation, we introduce fractional belief propagation. Fractional belief propagation is formulated in terms of a family of approximate free energies, which includes the Bethe free energy and the naive mean-field free as special cases. Using the linear response correction of the clique marginals, the scale parameters can be tuned. Simulation results illustrate the potential merits of the approach.

We consider loopy belief propagation for approximate inference in probabilistic graphicalmodels. A limitation of the standard algorithm is that clique marginals are computed as if there were no loops in the graph. To overcome this limitation, we introduce fractional belief propagation. Fractional belief propagation is formulated in terms of a family of approximate freeenergies, which includes the Bethe free energy and the naive mean-field free as special cases. Using the linear response correction ofthe clique marginals, the scale parameters can be tuned. Simulation results illustrate the potential merits of the approach.

It has been noted by several authors that Belief Propagation can can also give impressive results for graphs that are not trees [2]. The Cluster Variation Method (CVM), is a method that has been developed in the physics community for approximate inference in the Ising model [3]. The CVM approximates the joint probability distribution by a number of (overlapping) marginal distributions (clusters). The quality of the approximation is determined by the size and number of clusters. When the clusters consist of only two variables, the method is known as the Bethe approximation.

It has been noted by several authors that Belief Propagation can can also give impressive results for graphs that are not trees [2]. The Cluster Variation Method (CVM), is a method that has been developed in the physics community for approximate inference in the Ising model [3]. The CVM approximates thejoint probability distribution by a number of (overlapping) marginal distributions (clusters). The quality of the approximation is determined by the size and number of clusters. When the clusters consist of only two variables, the method is known as the Bethe approximation.

In this paper, we derive a second order mean field theory for directed graphical probability models. By using an information theoretic argument it is shown how this can be done in the absense of a partition function. This method is a direct generalisation of the well-known TAP approximation for Boltzmann Machines. In a numerical example, it is shown that the method greatly improves the first order mean field approximation. For a restricted class of graphical models, so-called single overlap graphs, the second order method has comparable complexity to the first order method. For sigmoid belief networks, the method is shown to be particularly fast and effective.

In this paper, we derive a second order mean field theory for directed graphical probability models. By using an information theoretic argument itis shown how this can be done in the absense of a partition function. This method is a direct generalisation of the well-known TAP approximation for Boltzmann Machines. In a numerical example, it is shown that the method greatly improves the first order mean field approximation. Fora restricted class of graphical models, so-called single overlap graphs, the second order method has comparable complexity to the first order method. For sigmoid belief networks, the method is shown to be particularly fast and effective.