Consistency models possess high capabilities for image generation, advancing sampling steps to a single step through their advanced techniques. Current advancements move one step forward consistency training techniques and eliminates the limitation of distillation training. Even though the proposed curriculum and noise scheduling in improved training techniques yield better results than basic consistency models, it lacks well balanced noise distribution and its consistency between curriculum. In this study, it is investigated the balance between high and low noise levels in noise distribution and offered polynomial noise distribution to maintain the stability. This proposed polynomial noise distribution is also supported with a predefined Karras noises to prevent unique noise levels arises with Karras noise generation algorithm. Furthermore, by elimination of learned noisy steps with a curriculum based on sinusoidal function increase the performance of the model in denoising. To make a fair comparison with the latest released consistency model training techniques, experiments are conducted with same hyper-parameters except curriculum and noise distribution. The models utilized during experiments are determined with low depth to prove the robustness of our proposed technique. The results show that the polynomial noise distribution outperforms the model trained with log-normal noise distribution, yielding a 33.54 FID score after 100,000 training steps with constant discretization steps. Additionally, the implementation of a sinusoidal-based curriculum enhances denoising performance, resulting in a FID score of 30.48.

From both theoretical and empirical aspects, we demonstrate The complexity and high-dimensional parameter space of that SEMA can help DNNs to reach generalization modern DNNs has posed great challenges in optimization, optima that better trade-off between such as gradient vanishing or exploding, overfitting, and degeneration flatness and sharpness. To verify the effectiveness of large batch size (You et al., 2020). To address of SEMA, we conduct comparison experiments these obstacles, two branches of research have been conducted: with discriminative, generative, and regression improving optimizers or enhancing optimization by tasks on vision and language datasets, including regularization techniques. According to their characteristics image classification, self-supervised learning, object in Tab. 1, the improved optimizers (Kingma & Ba, 2014; detection and segmentation, image generation, Loshchilov & Hutter, 2019; Ginsburg et al., 2018; Zhang video prediction, attribute regression, and et al., 2019; Foret et al., 2021) tend to be more expensive language modeling. Comprehensive results with and focus on sharpness(deeper optimal) by refining the gradient, popular optimizers and networks show that SEMA while the popular regularizations (Srivastava et al., is a free lunch for DNN training by improving performances 2014; Cubuk et al., 2019; Zhang et al., 2018; Izmailov et al., and boosting convergence speeds.

This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-world issues such as molecule property prediction, protein structure feature extraction, and social network analysis. The mainstream method is utilizing contrastive learning to facilitate graph feature extraction, known as Graph Contrastive Learning (GCL). GCL, although effective, suffers from some complications in contrastive learning, such as the effect of false negative pairs. Moreover, augmentation strategies in GCL are weakly adaptive to diverse graph datasets. Motivated by these problems, we propose a novel framework called Structure Knowledge Refinement (SKR) which uses data structure to determine the probability of whether a pair is positive or negative. Meanwhile, we propose an augmentation strategy that naturally preserves the semantic meaning of the original data and is compatible with our SKR framework. Furthermore, we illustrate the effectiveness of our SKR framework through intuition and experiments. The experimental results on the tasks of graph-level classification demonstrate that our SKR framework is superior to most state-of-the-art baselines.

Large language models (LLMs), such as ChatGPT, have demonstrated impressive capabilities in various tasks and attracted an increasing interest as a natural language interface across many domains. Recently, large vision-language models (VLMs) like BLIP-2 and GPT-4 have been intensively investigated, which learn rich vision-language correlation from image-text pairs. However, despite these developments, the application of LLMs and VLMs in image quality assessment (IQA), particularly in medical imaging, remains to be explored, which is valuable for objective performance evaluation and potential supplement or even replacement of radiologists' opinions. To this end, this paper introduces IQAGPT, an innovative image quality assessment system integrating an image quality captioning VLM with ChatGPT for generating quality scores and textual reports. First, we build a CT-IQA dataset for training and evaluation, comprising 1,000 CT slices with diverse quality levels professionally annotated. To better leverage the capabilities of LLMs, we convert annotated quality scores into semantically rich text descriptions using a prompt template. Second, we fine-tune the image quality captioning VLM on the CT-IQA dataset to generate quality descriptions. The captioning model fuses the image and text features through cross-modal attention. Third, based on the quality descriptions, users can talk with ChatGPT to rate image quality scores or produce a radiological quality report. Our preliminary results demonstrate the feasibility of assessing image quality with large models. Remarkably, our IQAGPT outperforms GPT-4 and CLIP-IQA, as well as the multi-task classification and regression models that solely rely on images.

Protein design involves generating protein sequences based on their corresponding protein backbones. While deep generative models show promise for learning protein design directly from data, the lack of publicly available structure-sequence pairings limits their generalization capabilities. Previous efforts of generative protein design have focused on architectural improvements and pseudo-data augmentation to overcome this bottleneck. To further address this challenge, we propose a novel protein design paradigm called MMDesign, which leverages multi-modality transfer learning. To our knowledge, MMDesign is the first framework that combines a pretrained structural module with a pretrained contextual module, using an auto-encoder (AE) based language model to incorporate prior semantic knowledge of protein sequences. We also introduce a cross-layer cross-modal alignment algorithm to enable the structural module to learn long-term temporal information and ensure consistency between structural and contextual modalities. Experimental results, only training with the small CATH dataset, demonstrate that our MMDesign framework consistently outperforms other baselines on various public test sets. To further assess the biological plausibility of the generated protein sequences and data distribution, we present systematic quantitative analysis techniques that provide interpretability and reveal more about the laws of protein design.

Mixup is an efficient data augmentation approach that improves the generalization of neural networks by smoothing the decision boundary with mixed data. Recently, dynamic mixup methods have improved previous static policies effectively (e.g., linear interpolation) by maximizing target-related salient regions in mixed samples, but excessive additional time costs are not acceptable. These additional computational overheads mainly come from optimizing the mixed samples according to the mixed labels. However, we found that the extra optimizing step may be redundant because label-mismatched mixed samples are informative hard mixed samples for deep models to localize discriminative features. In this paper, we thus are not trying to propose a more complicated dynamic mixup policy but rather an efficient mixup objective function with a decoupled regularizer named Decoupled Mixup (DM). The primary effect is that DM can adaptively utilize those hard mixed samples to mine discriminative features without losing the original smoothness of mixup. As a result, DM enables static mixup methods to achieve comparable or even exceed the performance of dynamic methods without any extra computation. This also leads to an interesting objective design problem for mixup training that we need to focus on both smoothing the decision boundaries and identifying discriminative features.

Computed tomography (CT) involves a patient's exposure to ionizing radiation. To reduce the radiation dose, we can either lower the X-ray photon count or down-sample projection views. However, either of the ways often compromises image quality. To address this challenge, here we introduce an iterative reconstruction algorithm regularized by a diffusion prior. Drawing on the exceptional imaging prowess of the denoising diffusion probabilistic model (DDPM), we merge it with a reconstruction procedure that prioritizes data fidelity. This fusion capitalizes on the merits of both techniques, delivering exceptional reconstruction results in an unsupervised framework. To further enhance the efficiency of the reconstruction process, we incorporate the Nesterov momentum acceleration technique. This enhancement facilitates superior diffusion sampling in fewer steps. As demonstrated in our experiments, our method offers a potential pathway to high-definition CT image reconstruction with minimized radiation.

Peptides are formed by the dehydration condensation of multiple amino acids. The primary structure of a peptide can be represented either as an amino acid sequence or as a molecular graph consisting of atoms and chemical bonds. Previous studies have indicated that deep learning routes specific to sequential and graphical peptide forms exhibit comparable performance on downstream tasks. Despite the fact that these models learn representations of the same modality of peptides, we find that they explain their predictions differently. Considering sequential and graphical models as two experts making inferences from different perspectives, we work on fusing expert knowledge to enrich the learned representations for improving the discriminative performance. To achieve this, we propose a peptide co-modeling method, RepCon, which employs a contrastive learning-based framework to enhance the mutual information of representations from decoupled sequential and graphical end-to-end models. It considers representations from the sequential encoder and the graphical encoder for the same peptide sample as a positive pair and learns to enhance the consistency of representations between positive sample pairs and to repel representations between negative pairs. Empirical studies of RepCon and other co-modeling methods are conducted on open-source discriminative datasets, including aggregation propensity, retention time, antimicrobial peptide prediction, and family classification from Peptide Database. Our results demonstrate the superiority of the co-modeling approach over independent modeling, as well as the superiority of RepCon over other methods under the co-modeling framework. In addition, the attribution on RepCon further corroborates the validity of the approach at the level of model explanation.

Inspired by the diversity of biological neurons, quadratic artificial neurons can play an important role in deep learning models. The type of quadratic neurons of our interest replaces the inner-product operation in the conventional neuron with a quadratic function. Despite promising results so far achieved by networks of quadratic neurons, there are important issues not well addressed. Theoretically, the superior expressivity of a quadratic network over either a conventional network or a conventional network via quadratic activation is not fully elucidated, which makes the use of quadratic networks not well grounded. Practically, although a quadratic network can be trained via generic backpropagation, it can be subject to a higher risk of collapse than the conventional counterpart. To address these issues, we first apply the spline theory and a measure from algebraic geometry to give two theorems that demonstrate better model expressivity of a quadratic network than the conventional counterpart with or without quadratic activation. Then, we propose an effective training strategy referred to as ReLinear to stabilize the training process of a quadratic network, thereby unleashing the full potential in its associated machine learning tasks. Comprehensive experiments on popular datasets are performed to support our findings and confirm the performance of quadratic deep learning. We have shared our code in \url{https://github.com/FengleiFan/ReLinear}.

With advances in generative artificial intelligence (AI), it is now possible to produce realistic-looking automated reports for preliminary reads of radiology images. This can expedite clinical workflows, improve accuracy and reduce overall costs. However, it is also well-known that such models often hallucinate, leading to false findings in the generated reports. In this paper, we propose a new method of fact-checking of AI-generated reports using their associated images. Specifically, the developed examiner differentiates real and fake sentences in reports by learning the association between an image and sentences describing real or potentially fake findings. To train such an examiner, we first created a new dataset of fake reports by perturbing the findings in the original ground truth radiology reports associated with images. Text encodings of real and fake sentences drawn from these reports are then paired with image encodings to learn the mapping to real/fake labels. The utility of such an examiner is demonstrated for verifying automatically generated reports by detecting and removing fake sentences. Future generative AI approaches can use the resulting tool to validate their reports leading to a more responsible use of AI in expediting clinical workflows.