Syben, Christopher
An Interpretable X-ray Style Transfer via Trainable Local Laplacian Filter
Eckert, Dominik, Ritschl, Ludwig, Syben, Christopher, Hümmer, Christian, Wicklein, Julia, Beister, Marcel, Kappler, Steffen, Stober, Sebastian
Radiologists have preferred visual impressions or 'styles' of X-ray images that are manually adjusted to their needs to support their diagnostic performance. In this work, we propose an automatic and interpretable X-ray style transfer by introducing a trainable version of the Local Laplacian Filter (LLF). From the shape of the LLF's optimized remap function, the characteristics of the style transfer can be inferred and reliability of the algorithm can be ensured. Moreover, we enable the LLF to capture complex X-ray style features by replacing the remap function with a Multi-Layer Perceptron (MLP) and adding a trainable normalization layer. We demonstrate the effectiveness of the proposed method by transforming unprocessed mammographic X-ray images into images that match the style of target mammograms and achieve a Structural Similarity Index (SSIM) of 0.94 compared to 0.82 of the baseline LLF style transfer method from Aubry et al.
Data-driven Modeling in Metrology -- A Short Introduction, Current Developments and Future Perspectives
Schneider, Linda-Sophie, Krauss, Patrick, Schiering, Nadine, Syben, Christopher, Schielein, Richard, Maier, Andreas
Abstract: Mathematical models are vital to the field of metrology, playing a key role in the derivation of measurement results and the calculation of uncertainties from measurement data, informed by an understanding of the measurement process. These models generally represent the correlation between the quantity being measured and all other pertinent quantities. Such relationships are used to construct measurement systems that can interpret measurement data to generate conclusions and predictions about the measurement system itself. Classic models are typically analytical, built on fundamental physical principles. However, the rise of digital technology, expansive sensor networks, and high-performance computing hardware have led to a growing shift towards data-driven methodologies. This trend is especially prominent when dealing with large, intricate networked sensor systems in situations where there is limited expert understanding of the frequently changing real-world contexts. Here, we demonstrate the variety of opportunities that data-driven modeling presents, and how they have been already implemented in various real-world applications.
StyleX: A Trainable Metric for X-ray Style Distances
Eckert, Dominik, Syben, Christopher, Hümmer, Christian, Ritschl, Ludwig, Kappler, Steffen, Stober, Sebastian
The progression of X-ray technology introduces diverse image styles that need to be adapted to the preferences of radiologists. To support this task, we introduce a novel deep learning-based metric that quantifies style differences of non-matching image pairs. At the heart of our metric is an encoder capable of generating X-ray image style representations. This encoder is trained without any explicit knowledge of style distances by exploiting Simple Siamese learning. During inference, the style representations produced by the encoder are used to calculate a distance metric for non-matching image pairs. Our experiments investigate the proposed concept for a disclosed reproducible and a proprietary image processing pipeline along two dimensions: First, we use a t-distributed stochastic neighbor embedding (t-SNE) analysis to illustrate that the encoder outputs provide meaningful and discriminative style representations. Second, the proposed metric calculated from the encoder outputs is shown to quantify style distances for non-matching pairs in good alignment with the human perception. These results confirm that our proposed method is a promising technique to quantify style differences, which can be used for guided style selection as well as automatic optimization of image pipeline parameters.
The Artificial Neural Twin -- Process Optimization and Continual Learning in Distributed Process Chains
Emmert, Johannes, Mendez, Ronald, Dastjerdi, Houman Mirzaalian, Syben, Christopher, Maier, Andreas
Industrial process optimization and control is crucial to increase economic and ecologic efficiency. However, data sovereignty, differing goals, or the required expert knowledge for implementation impede holistic implementation. Further, the increasing use of data-driven AI-methods in process models and industrial sensory often requires regular fine-tuning to accommodate distribution drifts. We propose the Artificial Neural Twin, which combines concepts from model predictive control, deep learning, and sensor networks to address these issues. Our approach introduces differentiable data fusion to estimate the state of distributed process steps and their dependence on input data. By treating the interconnected process steps as a quasi neural-network, we can backpropagate loss gradients for process optimization or model fine-tuning to process parameters or AI models respectively. The concept is demonstrated on a virtual machine park simulated in Unity, consisting of bulk material processes in plastic recycling.
Task-based Generation of Optimized Projection Sets using Differentiable Ranking
Schneider, Linda-Sophie, Thies, Mareike, Syben, Christopher, Schielein, Richard, Unberath, Mathias, Maier, Andreas
We present a method for selecting valuable projections in computed tomography (CT) scans to enhance image reconstruction and diagnosis. The approach integrates two important factors, projection-based detectability and data completeness, into a single feed-forward neural network. The network evaluates the value of projections, processes them through a differentiable ranking function and makes the final selection using a straight-through estimator. Data completeness is ensured through the label provided during training. The approach eliminates the need for heuristically enforcing data completeness, which may exclude valuable projections. The method is evaluated on simulated data in a non-destructive testing scenario, where the aim is to maximize the reconstruction quality within a specified region of interest. We achieve comparable results to previous methods, laying the foundation for using reconstruction-based loss functions to learn the selection of projections.
Is Medical Chest X-ray Data Anonymous?
Packhäuser, Kai, Gündel, Sebastian, Münster, Nicolas, Syben, Christopher, Christlein, Vincent, Maier, Andreas
With the rise and ever-increasing potential of deep learning techniques in recent years, publicly available medical data sets became a key factor to enable reproducible development of diagnostic algorithms in the medical domain. Medical data contains sensitive patient-related information and is therefore usually anonymized by removing patient identifiers, e.g., patient names before publication. To the best of our knowledge, we are the first to show that a well-trained deep learning system is able to recover the patient identity from chest X-ray data. We demonstrate this using the publicly available large-scale ChestX-ray14 dataset, a collection of 112,120 frontal-view chest X-ray images from 30,805 unique patients. Our verification system is able to identify whether two frontal chest X-ray images are from the same person with an AUC of 0.9940 and a classification accuracy of 95.55%. We further highlight that the proposed system is able to reveal the same person even ten and more years after the initial scan. When pursuing a retrieval approach, we observe an mAP@R of 0.9748 and a precision@1 of 0.9963. Based on this high identification rate, a potential attacker may leak patient-related information and additionally cross-reference images to obtain more information. Thus, there is a great risk of sensitive content falling into unauthorized hands or being disseminated against the will of the concerned patients. Especially during the COVID-19 pandemic, numerous chest X-ray datasets have been published to advance research. Therefore, such data may be vulnerable to potential attacks by deep learning-based re-identification algorithms.
Image Quality Assessment for Rigid Motion Compensation
Preuhs, Alexander, Manhart, Michael, Roser, Philipp, Stimpel, Bernhard, Syben, Christopher, Psychogios, Marios, Kowarschik, Markus, Maier, Andreas
Diagnostic stroke imaging with C-arm cone-beam computed tomography (CBCT) enables reduction of time-to-therapy for endovascular procedures. However, the prolonged acquisition time compared to helical CT increases the likelihood of rigid patient motion. Rigid motion corrupts the geometry alignment assumed during reconstruction, resulting in image blurring or streaking artifacts. To reestablish the geometry, we estimate the motion trajectory by an autofocus method guided by a neural network, which was trained to regress the reprojection error, based on the image information of a reconstructed slice. The network was trained with CBCT scans from 19 patients and evaluated using an additional test patient. It adapts well to unseen motion amplitudes and achieves superior results in a motion estimation benchmark compared to the commonly used entropy-based method.
Learning with Known Operators reduces Maximum Training Error Bounds
Maier, Andreas K., Syben, Christopher, Stimpel, Bernhard, Würfl, Tobias, Hoffmann, Mathis, Schebesch, Frank, Fu, Weilin, Mill, Leonid, Kling, Lasse, Christiansen, Silke
We describe an approach for incorporating prior knowledge into machine learning algorithms. We aim at applications in physics and signal processing in which we know that certain operations must be embedded into the algorithm. Any operation that allows computation of a gradient or sub-gradient towards its inputs is suited for our framework. We derive a maximal error bound for deep nets that demonstrates that inclusion of prior knowledge results in its reduction. Furthermore, we also show experimentally that known operators reduce the number of free parameters. We apply this approach to various tasks ranging from CT image reconstruction over vessel segmentation to the derivation of previously unknown imaging algorithms. As such the concept is widely applicable for many researchers in physics, imaging, and signal processing. We assume that our analysis will support further investigation of known operators in other fields of physics, imaging, and signal processing.