In the quantitative analysis of competitive sports, a fundamental task is to estimate the skills of the different agents ('players') involved in a given competition based on the outcome of pairwise comparisons ('matches') between said players, often in an online setting. Skill estimation facilitates the prediction of various relevant outcomes of subsequent matches, which can then be applied towards high-level decision-making for the competition, including player seeding, fair team matching, and more. There are several established approaches to the task of skill estimation, including among others the Bradley-Terry model (Bradley and Terry, 1952), the Elo rating system (Elo, 1978), the Glicko rating system (Glickman, 1999), and TrueSkill (Herbrich et al., 2006) each with various levels of complexity and varying degrees of statistical motivation. Skill rating is of paramount importance in the world of competitive sports as it serves as a foundational tool for assessing and comparing the abilities of players and how they vary over time. By accurately quantifying skill levels, skill rating systems enable fair and balanced competition, inform strategic decision-making, and enhance the overall sporting level.

Addressing the challenge of scaling-up epidemiological inference to complex and heterogeneous models, we introduce Poisson Approximate Likelihood (PAL) methods. In contrast to the popular ODE approach to compartmental modelling, in which a large population limit is used to motivate a deterministic model, PALs are derived from approximate filtering equations for finite-population, stochastic compartmental models, and the large population limit drives consistency of maximum PAL estimators. Our theoretical results appear to be the first likelihood-based parameter estimation consistency results which apply to a broad class of partially observed stochastic compartmental models and address the large population limit. PALs are simple to implement, involving only elementary arithmetic operations and no tuning parameters, and fast to evaluate, requiring no simulation from the model and having computational cost independent of population size. Through examples we demonstrate how PALs can be used to: fit an age-structured model of influenza, taking advantage of automatic differentiation in Stan; compare over-dispersion mechanisms in a model of rotavirus by embedding PALs within sequential Monte Carlo; and evaluate the role of unit-specific parameters in a meta-population model of measles.

Compartmental models are used for predicting the scale and duration of epidemics, estimating epidemiological parameters such as reproduction numbers, and guiding outbreak control measures [Brauer, 2008, O'Neill, 2010, Kucharski et al., 2020]. They are increasingly important because they allow joint modelling of disease dynamics and multimodal data, such as medical test results, cell phone and transport flow data [Rubrichi et al., 2018, Wu et al., 2020], census and demographic information [Prem et al., 2020]. However, statistical inference in stochastic variants of compartmental models is a major computational challenge [Bretó, 2018]. The likelihood function for model parameters is usually intractable because it involves summation over a prohibitively large number of configurations of latent variables representing counts of subpopulations in disease states which cannot be observed directly. This has lead to the recent development of sophisticated computational methods for approximate inference involving various forms of stochastic simulation [Funk and King, 2020].

We define an evolving in time Bayesian neural network called a Hidden Markov neural network. The weights of a feed-forward neural network are modelled with the hidden states of a Hidden Markov model, whose observed process is given by the available data. A filtering algorithm is used to learn a variational approximation to the evolving in time posterior over the weights. Training is pursued through a sequential version of Bayes by Backprop Blundell et al. 2015, which is enriched with a stronger regularization technique called variational DropConnect. The experiments test variational DropConnect on MNIST and display the performance of Hidden Markov neural networks on time series.

We propose algorithms for approximate filtering and smoothing in high-dimensional factorial hidden Markov models. The approximation involves discarding, in a principled way, likelihood factors according a notion of locality in a factor graph associated with the emission distribution. This allows the exponential-in-dimension cost of exact filtering and smoothing to be avoided. We prove that the approximation accuracy, measured in a local total variation norm, is `dimension-free' in the sense that as the overall dimension of the model increases the error bounds we derive do not necessarily degrade. A key step in the analysis is to quantify the error introduced by localizing the likelihood function in a Bayes' rule update. The factorial structure of the likelihood function which we exploit arises naturally when data have known spatial or network structure. We demonstrate the new algorithms on synthetic examples and a London Underground passenger flow problem, where the factor graph is effectively given by the train network.