This paper proposes an accelerated consensus-based distributed iterative algorithm for resource allocation and scheduling. The proposed gradient-tracking algorithm introduces an auxiliary variable to add momentum towards the optimal state. We prove that this solution is all-time feasible, implying that the coupling constraint always holds along the algorithm iterative procedure; therefore, the algorithm can be terminated at any time. This is in contrast to the ADMM-based solutions that meet constraint feasibility asymptotically. Further, we show that the proposed algorithm can handle possible link nonlinearity due to logarithmically-quantized data transmission (or any sign-preserving odd sector-bound nonlinear mapping). We prove convergence over uniformly-connected dynamic networks (i.e., a hybrid setup) that may occur in mobile and time-varying multi-agent networks. Further, the latency issue over the network is addressed by proposing delay-tolerant solutions. To our best knowledge, accelerated momentum-based convergence, nonlinear linking, all-time feasibility, uniform network connectivity, and handling (possible) time delays are not altogether addressed in the literature. These contributions make our solution practical in many real-world applications.

Graph-structured datasets often suffer from class imbalance, which complicates node classification tasks. In this work, we address this issue by first providing an upper bound on population risk for imbalanced transductive node classification. We then propose a simple and novel algorithm, Uncertainty-aware Pseudo-labeling (UPL). Our approach leverages pseudo-labels assigned to unlabeled nodes to mitigate the adverse effects of imbalance on classification accuracy. Furthermore, the UPL algorithm enhances the accuracy of pseudo-labeling by reducing training noise of pseudo-labels through a novel uncertainty-aware approach. We comprehensively evaluate the UPL algorithm across various benchmark datasets, demonstrating its superior performance compared to existing state-of-the-art methods.

Intelligent transportation systems (ITS) aim to advance innovative strategies relating to different modes of transport, traffic management, and autonomous vehicles. This paper studies the platoon of connected and autonomous vehicles (CAV) and proposes a distributed observer to track the state of the CAV dynamics. First, we model the CAV dynamics via an LTI interconnected system. Then, a consensus-based strategy is proposed to infer the state of the CAV dynamics based on local information exchange over the communication network of vehicles. A linear-matrix-inequality (LMI) technique is adopted for the block-diagonal observer gain design such that this gain is associated in a distributed way and locally to every vehicle. The distributed observer error dynamics is then shown to follow the structure of the Kronecker matrix product of the system dynamics and the adjacency matrix of the CAV network. The notions of survivable network design and redundant observer scheme are further discussed in the paper to address resilience to link and node failure. Finally, we verify our theoretical contributions via numerical simulations.

Intelligent transportation systems have recently emerged to address the growing interest for safer, more efficient, and sustainable transportation solutions. In this direction, this paper presents distributed algorithms for control and optimization over vehicular networks. First, we formulate the autonomous vehicle platooning framework based on model-predictive-control (MPC) strategies and present its objective optimization as a cooperative quadratic cost function. Then, we propose a distributed algorithm to locally optimize this objective at every vehicle subject to data quantization over the communication network of vehicles. In contrast to most existing literature that assumes ideal communication channels, log-scale data quantization over the network is addressed in this work, which is more realistic and practical. In particular, we show by simulation that the proposed log-quantized algorithm reaches optimal convergence with less residual and optimality gap. This outperforms the existing literature considering uniform quantization which leads to a large optimality gap and residual.

Electroencephalogram (EEG) signals have emerged as a promising modality for biometric identification. While previous studies have explored the use of imagined speech with semantically meaningful words for subject identification, most have relied on additional visual or auditory cues. In this study, we introduce a cueless EEG-based imagined speech paradigm, where subjects imagine the pronunciation of semantically meaningful words without any external cues. This innovative approach addresses the limitations of prior methods by requiring subjects to select and imagine words from a predefined list naturally. The dataset comprises over 4,350 trials from 11 subjects across five sessions. We assess a variety of classification methods, including traditional machine learning techniques such as Support Vector Machines (SVM) and XGBoost, as well as time-series foundation models and deep learning architectures specifically designed for EEG classification, such as EEG Conformer and Shallow ConvNet. A session-based hold-out validation strategy was employed to ensure reliable evaluation and prevent data leakage. Our results demonstrate outstanding classification accuracy, reaching 97.93%. These findings highlight the potential of cueless EEG paradigms for secure and reliable subject identification in real-world applications, such as brain-computer interfaces (BCIs).

Meta-learning involves multiple learners, each dedicated to specific tasks, collaborating in a data-constrained setting. In current meta-learning methods, task learners locally learn models from sensitive data, termed support sets. These task learners subsequently share model-related information, such as gradients or loss values, which is computed using another part of the data termed query set, with a meta-learner. The meta-learner employs this information to update its meta-knowledge. Despite the absence of explicit data sharing, privacy concerns persist. This paper examines potential data leakage in a prominent metalearning algorithm, specifically Model-Agnostic Meta-Learning (MAML). In MAML, gradients are shared between the metalearner and task-learners. The primary objective is to scrutinize the gradient and the information it encompasses about the task dataset. Subsequently, we endeavor to propose membership inference attacks targeting the task dataset containing support and query sets. Finally, we explore various noise injection methods designed to safeguard the privacy of task data and thwart potential attacks. Experimental results demonstrate the effectiveness of these attacks on MAML and the efficacy of proper noise injection methods in countering them.

Motivation: Drug repurposing is a viable solution for reducing the time and cost associated with drug development. However, thus far, the proposed drug repurposing approaches still need to meet expectations. Therefore, it is crucial to offer a systematic approach for drug repurposing to achieve cost savings and enhance human lives. In recent years, using biological network-based methods for drug repurposing has generated promising results. Nevertheless, these methods have limitations. Primarily, the scope of these methods is generally limited concerning the size and variety of data they can effectively handle. Another issue arises from the treatment of heterogeneous data, which needs to be addressed or converted into homogeneous data, leading to a loss of information. A significant drawback is that most of these approaches lack end-to-end functionality, necessitating manual implementation and expert knowledge in certain stages. Results: We propose a new solution, HGTDR (Heterogeneous Graph Transformer for Drug Repurposing), to address the challenges associated with drug repurposing. HGTDR is a three-step approach for knowledge graph-based drug re-purposing: 1) constructing a heterogeneous knowledge graph, 2) utilizing a heterogeneous graph transformer network, and 3) computing relationship scores using a fully connected network. By leveraging HGTDR, users gain the ability to manipulate input graphs, extract information from diverse entities, and obtain their desired output. In the evaluation step, we demonstrate that HGTDR performs comparably to previous methods. Furthermore, we review medical studies to validate our method's top ten drug repurposing suggestions, which have exhibited promising results. We also demon-strated HGTDR's capability to predict other types of relations through numerical and experimental validation, such as drug-protein and disease-protein inter-relations.

The protein-ligand binding affinity (PLA) prediction goal is to predict whether or not the ligand could bind to a protein sequence. Recently, in PLA prediction, deep learning has received much attention. Two steps are involved in deep learning-based approaches: feature extraction and task prediction step. Many deep learning-based approaches concentrate on introducing new feature extraction networks or integrating auxiliary knowledge like protein-protein interaction networks or gene ontology knowledge. Then, a task prediction network is designed simply using some fully connected layers. This paper aims to integrate retrieved similar hard protein-ligand pairs in PLA prediction (i.e., task prediction step) using a semi-supervised graph convolutional network (GCN). Hard protein-ligand pairs are retrieved for each input query sample based on the manifold smoothness constraint. Then, a graph is learned automatically in which each node is a protein-ligand pair, and each edge represents the similarity between pairs. In other words, an end-to-end framework is proposed that simultaneously retrieves hard similar samples, learns protein-ligand descriptor, learns the graph topology of the input sample with retrieved similar hard samples (learn adjacency matrix), and learns a semi-supervised GCN to predict the binding affinity (as task predictor). The training step adjusts the parameter values, and in the inference step, the learned model is fine-tuned for each input sample. To evaluate the proposed approach, it is applied to the four well-known PDBbind, Davis, KIBA, and BindingDB datasets. The results show that the proposed method significantly performs better than the comparable approaches.

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) is a gene editing technology that has revolutionized the fields of biology and medicine. However, one of the challenges of using CRISPR is predicting the on-target efficacy and off-target sensitivity of single-guide RNAs (sgRNAs). This is because most existing methods are trained on separate datasets with different genes and cells, which limits their generalizability. In this paper, we propose a novel ensemble learning method for sgRNA design that is accurate and generalizable. Our method combines the predictions of multiple machine learning models to produce a single, more robust prediction. This approach allows us to learn from a wider range of data, which improves the generalizability of our model. We evaluated our method on a benchmark dataset of sgRNA designs and found that it outperformed existing methods in terms of both accuracy and generalizability. Our results suggest that our method can be used to design sgRNAs with high sensitivity and specificity, even for new genes or cells. This could have important implications for the clinical use of CRISPR, as it would allow researchers to design more effective and safer treatments for a variety of diseases.

This paper proposes two nonlinear dynamics to solve constrained distributed optimization problem for resource allocation over a multi-agent network. In this setup, coupling constraint refers to resource-demand balance which is preserved at all-times. The proposed solutions can address various model nonlinearities, for example, due to quantization and/or saturation. Further, it allows to reach faster convergence or to robustify the solution against impulsive noise or uncertainties. We prove convergence over weakly connected networks using convex analysis and Lyapunov theory. Our findings show that convergence can be reached for general sign-preserving odd nonlinearity. We further propose delay-tolerant mechanisms to handle general bounded heterogeneous time-varying delays over the communication network of agents while preserving all-time feasibility. This work finds application in CPU scheduling and coverage control among others. This paper advances the state-of-the-art by addressing (i) possible nonlinearity on the agents/links, meanwhile handling (ii) resource-demand feasibility at all times, (iii) uniform-connectivity instead of all-time connectivity, and (iv) possible heterogeneous and time-varying delays. To our best knowledge, no existing work addresses contributions (i)-(iv) altogether. Simulations and comparative analysis are provided to corroborate our contributions.