The preservation of aquatic biodiversity is critical in mitigating the effects of climate change. Aquatic scene understanding plays a pivotal role in aiding marine scientists in their decision-making processes. In this paper, we introduce AquaticCLIP, a novel contrastive language-image pre-training model tailored for aquatic scene understanding. AquaticCLIP presents a new unsupervised learning framework that aligns images and texts in aquatic environments, enabling tasks such as segmentation, classification, detection, and object counting. By leveraging our large-scale underwater image-text paired dataset without the need for ground-truth annotations, our model enriches existing vision-language models in the aquatic domain. For this purpose, we construct a 2 million underwater image-text paired dataset using heterogeneous resources, including YouTube, Netflix, NatGeo, etc. To fine-tune AquaticCLIP, we propose a prompt-guided vision encoder that progressively aggregates patch features via learnable prompts, while a vision-guided mechanism enhances the language encoder by incorporating visual context. The model is optimized through a contrastive pretraining loss to align visual and textual modalities. AquaticCLIP achieves notable performance improvements in zero-shot settings across multiple underwater computer vision tasks, outperforming existing methods in both robustness and interpretability. Our model sets a new benchmark for vision-language applications in underwater environments. The code and dataset for AquaticCLIP are publicly available on GitHub at xxx.

Many current visual object tracking benchmarks such as OTB100, NfS, UAV123, LaSOT, and GOT-10K, predominantly contain day-time scenarios while the challenges posed by the night-time has been less investigated. It is primarily because of the lack of a large-scale, well-annotated night-time benchmark for rigorously evaluating tracking algorithms. To this end, this paper presents NT-VOT211, a new benchmark tailored for evaluating visual object tracking algorithms in the challenging night-time conditions. NT-VOT211 consists of 211 diverse videos, offering 211,000 well-annotated frames with 8 attributes including camera motion, deformation, fast motion, motion blur, tiny target, distractors, occlusion and out-of-view. To the best of our knowledge, it is the largest night-time tracking benchmark to-date that is specifically designed to address unique challenges such as adverse visibility, image blur, and distractors inherent to night-time tracking scenarios. Through a comprehensive analysis of results obtained from 42 diverse tracking algorithms on NT-VOT211, we uncover the strengths and limitations of these algorithms, highlighting opportunities for enhancements in visual object tracking, particularly in environments with suboptimal lighting. Besides, a leaderboard for revealing performance rankings, annotation tools, comprehensive meta-information and all the necessary code for reproducibility of results is made publicly available. We believe that our NT-VOT211 benchmark will not only be instrumental in facilitating field deployment of VOT algorithms, but will also help VOT enhancements and it will unlock new real-world tracking applications. Our dataset and other assets can be found at: {https://github.com/LiuYuML/NV-VOT211.

Acetylation of lysine residues (K-Ace) is a post-translation modification occurring in both prokaryotes and eukaryotes. It plays a crucial role in disease pathology and cell biology hence it is important to identify these K-Ace sites. In the past, many machine learning-based models using hand-crafted features and encodings have been used to find and analyze the characteristics of K-Ace sites however these methods ignore long term relationships within sequences and therefore observe performance degradation. In the current work we propose Deep-Ace, a deep learning-based framework using Long-Short-Term-Memory (LSTM) network which has the ability to understand and encode long-term relationships within a sequence. Such relations are vital for learning discriminative and effective sequence representations. In the work reported here, the use of LSTM to extract deep features as well as for prediction of K-Ace sites using fully connected layers for eight different species of prokaryotic models (including B. subtilis, C. glutamicum, E. coli, G. kaustophilus, S. eriocheiris, B. velezensis, S. typhimurium, and M. tuberculosis) has been explored. Our proposed method has outperformed existing state of the art models achieving accuracy as 0.80, 0.79, 0.71, 0.75, 0.80, 0.83, 0.756, and 0.82 respectively for eight bacterial species mentioned above. The method with minor modifications can be used for eukaryotic systems and can serve as a tool for the prognosis and diagnosis of various diseases in humans.

Self-supervised learning systems have gained significant attention in recent years by leveraging clustering-based pseudo-labels to provide supervision without the need for human annotations. However, the noise in these pseudo-labels caused by the clustering methods poses a challenge to the learning process leading to degraded performance. In this work, we propose a pseudo-label refinement (SLR) algorithm to address this issue. The cluster labels from the previous epoch are projected to the current epoch cluster-labels space and a linear combination of the new label and the projected label is computed as a soft refined label containing the information from the previous epoch clusters as well as from the current epoch. In contrast to the common practice of using the maximum value as a cluster/class indicator, we employ hierarchical clustering on these soft pseudo-labels to generate refined hard-labels. This approach better utilizes the information embedded in the soft labels, outperforming the simple maximum value approach for hard label generation. The effectiveness of the proposed SLR algorithm is evaluated in the context of person re-identification (Re-ID) using unsupervised domain adaptation (UDA). Experimental results demonstrate that the modified Re-ID baseline, incorporating the SLR algorithm, achieves significantly improved mean Average Precision (mAP) performance in various UDA tasks, including real-to-synthetic, synthetic-to-real, and different real-to-real scenarios. These findings highlight the efficacy of the SLR algorithm in enhancing the performance of self-supervised learning systems.

Single-cell RNA sequencing (scRNA-seq) enables the study of cellular diversity at single cell level. It provides a global view of cell-type specification during the onset of biological mechanisms such as developmental processes and human organogenesis. Various statistical, machine and deep learning-based methods have been proposed for cell-type classification. Most of the methods utilizes unsupervised lower dimensional projections obtained from for a large reference data. In this work, we proposed a reference-based method for cell type classification, called EnProCell. The EnProCell, first, computes lower dimensional projections that capture both the high variance and class separability through an ensemble of principle component analysis and multiple discriminant analysis. In the second phase, EnProCell trains a deep neural network on the lower dimensional representation of data to classify cell types. The proposed method outperformed the existing state-of-the-art methods when tested on four different data sets produced from different single-cell sequencing technologies. The EnProCell showed higher accuracy (98.91) and F1 score (98.64) than other methods for predicting reference from reference datasets. Similarly, EnProCell also showed better performance than existing methods in predicting cell types for data with unknown cell types (query) from reference datasets (accuracy:99.52; F1 score: 99.07). In addition to improved performance, the proposed methodology is simple and does not require more computational resources and time. the EnProCell is available at https://github.com/umar1196/EnProCell.

Text classification is a quintessential and practical problem in natural language processing with applications in diverse domains such as sentiment analysis, fake news detection, medical diagnosis, and document classification. A sizable body of recent works exists where researchers have studied and tackled text classification from different angles with varying degrees of success. Graph convolution network (GCN)-based approaches have gained a lot of traction in this domain over the last decade with many implementations achieving state-of-the-art performance in more recent literature and thus, warranting the need for an updated survey. This work aims to summarize and categorize various GCN-based Text Classification approaches with regard to the architecture and mode of supervision. It identifies their strengths and limitations and compares their performance on various benchmark datasets. We also discuss future research directions and the challenges that exist in this domain.

In the field of 3D Human Pose Estimation from monocular videos, the presence of diverse occlusion types presents a formidable challenge. Prior research has made progress by harnessing spatial and temporal cues to infer 3D poses from 2D joint observations. This paper introduces a Dual Transformer Fusion (DTF) algorithm, a novel approach to obtain a holistic 3D pose estimation, even in the presence of severe occlusions. Confronting the issue of occlusion-induced missing joint data, we propose a temporal interpolation-based occlusion guidance mechanism. To enable precise 3D Human Pose Estimation, our approach leverages the innovative DTF architecture, which first generates a pair of intermediate views. Each intermediate-view undergoes spatial refinement through a self-refinement schema. Subsequently, these intermediate-views are fused to yield the final 3D human pose estimation. The entire system is end-to-end trainable. Through extensive experiments conducted on the Human3.6M and MPI-INF-3DHP datasets, our method's performance is rigorously evaluated. Notably, our approach outperforms existing state-of-the-art methods on both datasets, yielding substantial improvements. The code is available here: https://github.com/MehwishG/DTF.

Automatic annotation of large-scale datasets can introduce noisy training data labels, which adversely affect the learning process of deep neural networks (DNNs). Consequently, Noisy Labels Learning (NLL) has become a critical research field for Convolutional Neural Networks (CNNs), though it remains less explored for Vision Transformers (ViTs). In this study, we evaluate the vulnerability of ViT fine-tuning to noisy labels and compare its robustness with CNNs. We also investigate whether NLL methods developed for CNNs are equally effective for ViTs. Using linear probing and MLP-K fine-tuning, we benchmark two ViT backbones (ViT-B/16 and ViT-L/16) using three commonly used classification losses: Cross Entropy (CE), Focal Loss (FL), and Mean Absolute Error (MAE), alongside six robust NLL methods: GCE, SCE, NLNL, APL, NCE+AGCE, and ANL-CE. The evaluation is conducted across six datasets including MNIST, CIFAR-10/100, WebVision, Clothing1M, and Food-101N. Furthermore, we explore whether implicit prediction entropy minimization contributes to ViT robustness against noisy labels, noting a general trend of prediction entropy reduction across most NLL methods. Building on this observation, we examine whether explicit entropy minimization could enhance ViT resilience to noisy labels. Our findings indicate that incorporating entropy regularization enhances the performance of established loss functions such as CE and FL, as well as the robustness of the six studied NLL methods across both ViT backbones.

This paper proposes Comprehensive Pathology Language Image Pre-training (CPLIP), a new unsupervised technique designed to enhance the alignment of images and text in histopathology for tasks such as classification and segmentation. This methodology enriches vision-language models by leveraging extensive data without needing ground truth annotations. CPLIP involves constructing a pathology-specific dictionary, generating textual descriptions for images using language models, and retrieving relevant images for each text snippet via a pre-trained model. The model is then fine-tuned using a many-to-many contrastive learning method to align complex interrelated concepts across both modalities. Evaluated across multiple histopathology tasks, CPLIP shows notable improvements in zero-shot learning scenarios, outperforming existing methods in both interpretability and robustness and setting a higher benchmark for the application of vision-language models in the field. To encourage further research and replication, the code for CPLIP is available on GitHub at https://cplip.github.io/

Detecting firearms and accurately localizing individuals carrying them in images or videos is of paramount importance in security, surveillance, and content customization. However, this task presents significant challenges in complex environments due to clutter and the diverse shapes of firearms. To address this problem, we propose a novel approach that leverages human-firearm interaction information, which provides valuable clues for localizing firearm carriers. Our approach incorporates an attention mechanism that effectively distinguishes humans and firearms from the background by focusing on relevant areas. Additionally, we introduce a saliency-driven locality-preserving constraint to learn essential features while preserving foreground information in the input image. By combining these components, our approach achieves exceptional results on a newly proposed dataset. To handle inputs of varying sizes, we pass paired human-firearm instances with attention masks as channels through a deep network for feature computation, utilizing an adaptive average pooling layer. We extensively evaluate our approach against existing methods in human-object interaction detection and achieve significant results (AP=77.8\%) compared to the baseline approach (AP=63.1\%). This demonstrates the effectiveness of leveraging attention mechanisms and saliency-driven locality preservation for accurate human-firearm interaction detection. Our findings contribute to advancing the fields of security and surveillance, enabling more efficient firearm localization and identification in diverse scenarios.