Data annotation generally refers to the labeling or generating of raw data with relevant information, which could be used for improving the efficacy of machine learning models. The process, however, is labor-intensive and costly. The emergence of advanced Large Language Models (LLMs), exemplified by GPT-4, presents an unprecedented opportunity to automate the complicated process of data annotation. While existing surveys have extensively covered LLM architecture, training, and general applications, we uniquely focus on their specific utility for data annotation. This survey contributes to three core aspects: LLM-Based Annotation Generation, LLM-Generated Annotations Assessment, and LLM-Generated Annotations Utilization. Furthermore, this survey includes an in-depth taxonomy of data types that LLMs can annotate, a comprehensive review of learning strategies for models utilizing LLM-generated annotations, and a detailed discussion of the primary challenges and limitations associated with using LLMs for data annotation. Serving as a key guide, this survey aims to assist researchers and practitioners in exploring the potential of the latest LLMs for data annotation, thereby fostering future advancements in this critical field.

Few-shot Knowledge Graph (KG) Relational Reasoning aims to predict unseen triplets (i.e., query triplets) for rare relations in KGs, given only several triplets of these relations as references (i.e., support triplets). This task has gained significant traction due to the widespread use of knowledge graphs in various natural language processing applications. Previous approaches have utilized meta-training methods and manually constructed meta-relation sets to tackle this task. Recent efforts have focused on edge-mask-based methods, which exploit the structure of the contextualized graphs of target triplets (i.e., a subgraph containing relevant triplets in the KG). However, existing edge-mask-based methods have limitations in extracting insufficient information from KG and are highly influenced by spurious information in KG. To overcome these challenges, we propose SAFER (Subgraph Adaptation for Few-shot Relational Reasoning), a novel approach that effectively adapts the information in contextualized graphs to various subgraphs generated from support and query triplets to perform the prediction. Specifically, SAFER enables the extraction of more comprehensive information from support triplets while minimizing the impact of spurious information when predicting query triplets. Experimental results on three prevalent datasets demonstrate the superiority of our proposed framework SAFER.

One of the predominant methods for training world models is autoregressive prediction in the output space of the next element of a sequence. In Natural Language Processing (NLP), this takes the form of Large Language Models (LLMs) predicting the next token; in Computer Vision (CV), this takes the form of autoregressive models predicting the next frame/token/pixel. However, this approach differs from human cognition in several respects. First, human predictions about the future actively influence internal cognitive processes. Second, humans naturally evaluate the plausibility of predictions regarding future states. Based on this capability, and third, by assessing when predictions are sufficient, humans allocate a dynamic amount of time to make a prediction. This adaptive process is analogous to System 2 thinking in psychology. All these capabilities are fundamental to the success of humans at high-level reasoning and planning. Therefore, to address the limitations of traditional autoregressive models lacking these human-like capabilities, we introduce Energy-Based World Models (EBWM). EBWM involves training an Energy-Based Model (EBM) to predict the compatibility of a given context and a predicted future state. In doing so, EBWM enables models to achieve all three facets of human cognition described. Moreover, we developed a variant of the traditional autoregressive transformer tailored for Energy-Based models, termed the Energy-Based Transformer (EBT). Our results demonstrate that EBWM scales better with data and GPU Hours than traditional autoregressive transformers in CV, and that EBWM offers promising early scaling in NLP. Consequently, this approach offers an exciting path toward training future models capable of System 2 thinking and intelligently searching across state spaces.

In-context learning (ICL) empowers large language models (LLMs) to tackle new tasks by using a series of training instances as prompts. Since generating the prompts needs to sample from a vast pool of instances and annotate them (e.g., add labels in classification task), existing methods have proposed to select a subset of unlabeled examples for annotation, thus enhancing the quality of prompts and concurrently mitigating annotation costs. However, these methods often require a long time to select instances due to their complexity, hindering their practical viability. To address this limitation, we propose a graph-based selection method, FastGAS, designed to efficiently identify high-quality instances while minimizing computational overhead. Initially, we construct a data similarity graph based on instance similarities. Subsequently, employing a graph partitioning algorithm, we partition the graph into pieces. Within each piece (i.e., subgraph), we adopt a greedy approach to pick the most representative nodes. By aggregating nodes from diverse pieces and annotating the corresponding instances, we identify a set of diverse and representative instances for ICL. Compared to prior approaches, our method not only exhibits superior performance on different tasks but also significantly reduces selection time. In addition, we demonstrate the efficacy of our approach in LLMs of larger sizes.

The ubiquity of large-scale graphs in node-classification tasks significantly hinders the real-world applications of Graph Neural Networks (GNNs). Node sampling, graph coarsening, and dataset condensation are effective strategies for enhancing data efficiency. However, owing to the interdependence of graph nodes, coreset selection, which selects subsets of the data examples, has not been successfully applied to speed up GNN training on large graphs, warranting special treatment. This paper studies graph coresets for GNNs and avoids the interdependence issue by selecting ego-graphs (i.e., neighborhood subgraphs around a node) based on their spectral embeddings. We decompose the coreset selection problem for GNNs into two phases: a coarse selection of widely spread ego graphs and a refined selection to diversify their topologies. We design a greedy algorithm that approximately optimizes both objectives. Our spectral greedy graph coreset (SGGC) scales to graphs with millions of nodes, obviates the need for model pre-training, and applies to low-homophily graphs. Extensive experiments on ten datasets demonstrate that SGGC outperforms other coreset methods by a wide margin, generalizes well across GNN architectures, and is much faster than graph condensation.

Abstract--Graph Machine Learning (Graph ML) has witnessed substantial advancements in recent years. With their remarkable ability to process graph-structured data, Graph ML techniques have been extensively utilized across diverse applications, including critical domains like finance, healthcare, and transportation. Despite their societal benefits, recent research highlights significant safety concerns associated with the widespread use of Graph ML models. Lacking safety-focused designs, these models can produce unreliable predictions, demonstrate poor generalizability, and compromise data confidentiality. In high-stakes scenarios such as financial fraud detection, these vulnerabilities could jeopardize both individuals and society at large. Therefore, it is imperative to prioritize the development of safety-oriented Graph ML models to mitigate these risks and enhance public confidence in their applications. In this survey paper, we explore three critical aspects vital for enhancing safety in Graph ML: reliability, generalizability, and confidentiality. We categorize and analyze threats to each aspect under three headings: model threats, data threats, and attack threats. This novel taxonomy guides our review of effective strategies to protect against these threats. Our systematic review lays a groundwork for future research aimed at developing practical, safety-centered Graph ML models. Furthermore, we highlight the significance of safe Graph ML practices and suggest promising avenues for further investigation in this crucial area. To prevalent across a wide range of real-world applications, narrow this gap, our survey seeks to resolve two critical including drug discovery [15], traffic forecasting questions: (1) What are the key aspects involved in the safety [76], and disease diagnosis [96]. Within these domains, issues of Graph ML? (2) What specific types of threats might Graph Machine Learning (Graph ML) plays a pivotal role in arise within each aspect, and how can they be effectively modeling this data and executing graph-based predictive handled? To address the first question, we introduce a novel tasks [83], [187]. However, as the scope of Graph ML taxonomy that facilitates a thorough categorization of safety applications expands, concerns about their underlying safety issues in Graph ML. To answer the second question, we issues intensify [37].

Explainable AI (XAI) refers to techniques that provide human-understandable insights into the workings of AI models. Recently, the focus of XAI is being extended towards Large Language Models (LLMs) which are often criticized for their lack of transparency. This extension calls for a significant transformation in XAI methodologies because of two reasons. First, many existing XAI methods cannot be directly applied to LLMs due to their complexity and advanced capabilities. Second, as LLMs are increasingly deployed across diverse industry applications, the role of XAI shifts from merely opening the "black box" to actively enhancing the productivity and applicability of LLMs in real-world settings. Meanwhile, unlike traditional machine learning models that are passive recipients of XAI insights, the distinct abilities of LLMs can reciprocally enhance XAI. Therefore, in this paper, we introduce Usable XAI in the context of LLMs by analyzing (1) how XAI can benefit LLMs and AI systems, and (2) how LLMs can contribute to the advancement of XAI. We introduce 10 strategies, introducing the key techniques for each and discussing their associated challenges. We also provide case studies to demonstrate how to obtain and leverage explanations.

Graph generation generally aims to create new graphs that closely align with a specific graph distribution. Existing works often implicitly capture this distribution through the optimization of generators, potentially overlooking the intricacies of the distribution itself. Furthermore, these approaches generally neglect the insights offered by the learned distribution for graph generation. In contrast, in this work, we propose a novel self-conditioned graph generation framework designed to explicitly model graph distributions and employ these distributions to guide the generation process. We first perform self-conditioned modeling to capture the graph distributions by transforming each graph sample into a low-dimensional representation and optimizing a representation generator to create new representations reflective of the learned distribution. Subsequently, we leverage these bootstrapped representations as self-conditioned guidance for the generation process, thereby facilitating the generation of graphs that more accurately reflect the learned distributions. We conduct extensive experiments on generic and molecular graph datasets across various fields. Our framework demonstrates superior performance over existing state-of-the-art graph generation methods in terms of graph quality and fidelity to training data.

Federated learning is a collaborative learning paradigm that allows multiple clients to work together while ensuring the preservation of their privacy Yang et al. (2019a). By leveraging the collective knowledge and data from all participating clients, federated learning aims to achieve better learning performance compared with individual client efforts McMahan et al. (2017). This collaborative nature has made federated learning increasingly popular, finding numerous practical applications where data decentralization and privacy are paramount. The privacy-preserving solutions offered by federated learning have found extensive applications in domains such as healthcare, smart cities, and finance Zheng et al. (2022); Yang et al. (2019b); Xu et al. (2021). However, the effectiveness of the collaborative approach in federated learning is highly dependent on the distribution of data among the clients. While federated learning performs exceptionally well when data distribution among clients is independent and identically distributed (IID), this is not the case in many real-world scenarios Kairouz et al. (2021). When the global model, which is collectively trained across decentralized clients, encounters diverse datasets with varying statistical characteristics, it may face challenges in effectively generalizing to the unique local data of each client Zhao et al. (2018); Jiang et al. (2019). The performance of the global model may be suboptimal on certain clients' data due to differences in data distributions and patterns. This limitation becomes more pronounced as the diversity among local data from different clients continues to increase Deng et al. (2020).

Recent research has demonstrated the efficacy of pre-training graph neural networks (GNNs) to capture the transferable graph semantics and enhance the performance of various downstream tasks. However, the semantic knowledge learned from pretext tasks might be unrelated to the downstream task, leading to a semantic gap that limits the application of graph pre-training. To reduce this gap, traditional approaches propose hybrid pre-training to combine various pretext tasks together in a multi-task learning fashion and learn multi-grained knowledge, which, however, cannot distinguish tasks and results in some transferable task-specific knowledge distortion by each other. Moreover, most GNNs cannot distinguish nodes located in different parts of the graph, making them fail to learn position-specific knowledge and lead to suboptimal performance. In this work, inspired by the prompt-based tuning in natural language processing, we propose a unified framework for graph hybrid pre-training which injects the task identification and position identification into GNNs through a prompt mechanism, namely multi-task graph dual prompt (ULTRA-DP). Based on this framework, we propose a prompt-based transferability test to find the most relevant pretext task in order to reduce the semantic gap. To implement the hybrid pre-training tasks, beyond the classical edge prediction task (node-node level), we further propose a novel pre-training paradigm based on a group of $k$-nearest neighbors (node-group level). The combination of them across different scales is able to comprehensively express more structural semantics and derive richer multi-grained knowledge. Extensive experiments show that our proposed ULTRA-DP can significantly enhance the performance of hybrid pre-training methods and show the generalizability to other pre-training tasks and backbone architectures.