In the upcoming decade, deep learning may revolutionize the natural sciences, enhancing our capacity to model and predict natural occurrences. This could herald a new era of scientific exploration, bringing significant advancements across sectors from drug development to renewable energy. To answer this call, we present DeepSpeed4Science initiative (deepspeed4science.ai) which aims to build unique capabilities through AI system technology innovations to help domain experts to unlock today's biggest science mysteries. By leveraging DeepSpeed's current technology pillars (training, inference and compression) as base technology enablers, DeepSpeed4Science will create a new set of AI system technologies tailored for accelerating scientific discoveries by addressing their unique complexity beyond the common technical approaches used for accelerating generic large language models (LLMs). In this paper, we showcase the early progress we made with DeepSpeed4Science in addressing two of the critical system challenges in structural biology research.

Memory complexity and data scarcity have so far prohibited learning solution operators of partial differential equations (PDEs) at high resolutions. We address these limitations by introducing a new data efficient and highly parallelizable operator learning approach with reduced memory requirement and better generalization, called multi-grid tensorized neural operator (MG-TFNO). MG-TFNO scales to large resolutions by leveraging local and global structures of full-scale, real-world phenomena, through a decomposition of both the input domain and the operator's parameter space. Our contributions are threefold: i) we enable parallelization over input samples with a novel multi-grid-based domain decomposition, ii) we represent the parameters of the model in a high-order latent subspace of the Fourier domain, through a global tensor factorization, resulting in an extreme reduction in the number of parameters and improved generalization, and iii) we propose architectural improvements to the backbone FNO. Our approach can be used in any operator learning setting. We demonstrate superior performance on the turbulent Navier-Stokes equations where we achieve less than half the error with over 150x compression. The tensorization combined with the domain decomposition, yields over 150x reduction in the number of parameters and 7x reduction in the domain size without losses in accuracy, while slightly enabling parallelism.

We propose the geometry-informed neural operator (GINO), a highly efficient approach to learning the solution operator of large-scale partial differential equations with varying geometries. GINO uses a signed distance function and point-cloud representations of the input shape and neural operators based on graph and Fourier architectures to learn the solution operator. The graph neural operator handles irregular grids and transforms them into and from regular latent grids on which Fourier neural operator can be efficiently applied. GINO is discretization-convergent, meaning the trained model can be applied to arbitrary discretization of the continuous domain and it converges to the continuum operator as the discretization is refined. To empirically validate the performance of our method on large-scale simulation, we generate the industry-standard aerodynamics dataset of 3D vehicle geometries with Reynolds numbers as high as five million. For this large-scale 3D fluid simulation, numerical methods are expensive to compute surface pressure. We successfully trained GINO to predict the pressure on car surfaces using only five hundred data points. The cost-accuracy experiments show a $26,000 \times$ speed-up compared to optimized GPU-based computational fluid dynamics (CFD) simulators on computing the drag coefficient. When tested on new combinations of geometries and boundary conditions (inlet velocities), GINO obtains a one-fourth reduction in error rate compared to deep neural network approaches.

The Fourier neural operator (FNO) is a powerful technique for learning surrogate maps for partial differential equation (PDE) solution operators. For many real-world applications, which often require high-resolution data points, training time and memory usage are significant bottlenecks. While there are mixed-precision training techniques for standard neural networks, those work for real-valued datatypes on finite dimensions and therefore cannot be directly applied to FNO, which crucially operates in the (complex-valued) Fourier domain and in function spaces. On the other hand, since the Fourier transform is already an approximation (due to discretization error), we do not need to perform the operation at full precision. In this work, we (i) profile memory and runtime for FNO with full and mixed-precision training, (ii) conduct a study on the numerical stability of mixed-precision training of FNO, and (iii) devise a training routine which substantially decreases training time and memory usage (up to 34%), with little or no reduction in accuracy, on the Navier-Stokes and Darcy flow equations. Combined with the recently proposed tensorized FNO (Kossaifi et al., 2023), the resulting model has far better performance while also being significantly faster than the original FNO.

Tipping points are abrupt, drastic, and often irreversible changes in the evolution of non-stationary and chaotic dynamical systems. For instance, increased greenhouse gas concentrations are predicted to lead to drastic decreases in low cloud cover, referred to as a climatological tipping point. In this paper, we learn the evolution of such non-stationary dynamical systems using a novel recurrent neural operator (RNO), which learns mappings between function spaces. After training RNO on only the pre-tipping dynamics, we employ it to detect future tipping points using an uncertainty-based approach. In particular, we propose a conformal prediction framework to forecast tipping points by monitoring deviations from physics constraints (such as conserved quantities and partial differential equations), enabling forecasting of these abrupt changes along with a rigorous measure of uncertainty. We illustrate our proposed methodology on non-stationary ordinary and partial differential equations, such as the Lorenz-63 and Kuramoto-Sivashinsky equations. We also apply our methods to forecast a climate tipping point in stratocumulus cloud cover. In our experiments, we demonstrate that even partial or approximate physics constraints can be used to accurately forecast future tipping points.

In this paper, we propose physics-informed neural operators (PINO) that combine training data and physics constraints to learn the solution operator of a given family of parametric Partial Differential Equations (PDE). PINO is the first hybrid approach incorporating data and PDE constraints at different resolutions to learn the operator. Specifically, in PINO, we combine coarse-resolution training data with PDE constraints imposed at a higher resolution. The resulting PINO model can accurately approximate the ground-truth solution operator for many popular PDE families and shows no degradation in accuracy even under zero-shot super-resolution, i.e., being able to predict beyond the resolution of training data. PINO uses the Fourier neural operator (FNO) framework that is guaranteed to be a universal approximator for any continuous operator and discretization-convergent in the limit of mesh refinement. By adding PDE constraints to FNO at a higher resolution, we obtain a high-fidelity reconstruction of the ground-truth operator. Moreover, PINO succeeds in settings where no training data is available and only PDE constraints are imposed, while previous approaches, such as the Physics-Informed Neural Network (PINN), fail due to optimization challenges, e.g., in multi-scale dynamic systems such as Kolmogorov flows.

Deep learning often faces the challenge of efficiently processing dynamic inputs, such as sensor data or user inputs. For example, an AI writing assistant is required to update its suggestions in real time as a document is edited. Re-running the model each time is expensive, even with compression techniques like knowledge distillation, pruning, or quantization. Instead, we take an incremental computing approach, looking to reuse calculations as the inputs change. However, the dense connectivity of conventional architectures poses a major obstacle to incremental computation, as even minor input changes cascade through the network and restrict information reuse. To address this, we use vector quantization to discretize intermediate values in the network, which filters out noisy and unnecessary modifications to hidden neurons, facilitating the reuse of their values. We apply this approach to the transformers architecture, creating an efficient incremental inference algorithm with complexity proportional to the fraction of the modified inputs. Our experiments with adapting the OPT-125M pre-trained language model demonstrate comparable accuracy on document classification while requiring 12.1X (median) fewer operations for processing sequences of atomic edits.

Diffusion models have found widespread adoption in various areas. However, their sampling process is slow because it requires hundreds to thousands of network evaluations to emulate a continuous process defined by differential equations. In this work, we use neural operators, an efficient method to solve the probability flow differential equations, to accelerate the sampling process of diffusion models. Compared to other fast sampling methods that have a sequential nature, we are the first to propose a parallel decoding method that generates images with only one model forward pass. We propose diffusion model sampling with neural operator (DSNO) that maps the initial condition, i.e., Gaussian distribution, to the continuous-time solution trajectory of the reverse diffusion process. To model the temporal correlations along the trajectory, we introduce temporal convolution layers that are parameterized in the Fourier space into the given diffusion model backbone. We show our method achieves state-of-the-art FID of 3.78 for CIFAR-10 and 7.83 for ImageNet-64 in the one-model-evaluation setting.

We propose an efficient approach to train large diffusion models with masked transformers. While masked transformers have been extensively explored for representation learning, their application to generative learning is less explored in the vision domain. Our work is the first to exploit masked training to reduce the training cost of diffusion models significantly. Specifically, we randomly mask out a high proportion (\emph{e.g.}, 50\%) of patches in diffused input images during training. For masked training, we introduce an asymmetric encoder-decoder architecture consisting of a transformer encoder that operates only on unmasked patches and a lightweight transformer decoder on full patches. To promote a long-range understanding of full patches, we add an auxiliary task of reconstructing masked patches to the denoising score matching objective that learns the score of unmasked patches. Experiments on ImageNet-256$\times$256 show that our approach achieves the same performance as the state-of-the-art Diffusion Transformer (DiT) model, using only 31\% of its original training time. Thus, our method allows for efficient training of diffusion models without sacrificing the generative performance.

Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of chemistry, biology, and material discovery. For these scientific problems, molecules serve as the fundamental building blocks, and machine learning has emerged as a highly effective and powerful tool for modeling their geometric structures. Nevertheless, due to the rapidly evolving process of the field and the knowledge gap between science (e.g., physics, chemistry, & biology) and machine learning communities, a benchmarking study on geometrical representation for such data has not been conducted. To address such an issue, in this paper, we first provide a unified view of the current symmetry-informed geometric methods, classifying them into three main categories: invariance, equivariance with spherical frame basis, and equivariance with vector frame basis. Then we propose a platform, coined Geom3D, which enables benchmarking the effectiveness of geometric strategies. Geom3D contains 16 advanced symmetry-informed geometric representation models and 14 geometric pretraining methods over 46 diverse datasets, including small molecules, proteins, and crystalline materials. We hope that Geom3D can, on the one hand, eliminate barriers for machine learning researchers interested in exploring scientific problems; and, on the other hand, provide valuable guidance for researchers in computational chemistry, structural biology, and materials science, aiding in the informed selection of representation techniques for specific applications. The source code is available on the GitHub repository.