Graphein - Supplementary material

D.1 General parameters The following table shows the generic Graphein parameters for protein-protein interaction graphs.Parameter Default V alid values Description protein_list protein IDs (list of string) Proteins to include in the graph. See also the BioGRID API.Parameter Default V alid values Description searchNames True True, False If True, the interactor OFFICIAL_SYMBOL will be examined for a match with the protein list. D.3 STRING The following table shows the Graphein parameters for STRING. Parameter Default V alid values Description gene_list gene symbols (list of string) Genes to include in the graph. We provide performance assessment performed on an AMD EPYC 7742 64-Core Processor.