Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit

Laurence Aitchison, Lloyd Russell, Adam M. Packer, Jinyao Yan, Philippe Castonguay, Michael Hausser, Srinivas C. Turaga

Neural Information Processing Systems 

Population activity measurement by calcium imaging can be combined with cellular resolution optogenetic activity perturbations to enable the mapping of neural connectivity in vivo .

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