LiNGAM determines the variable order from cause to effect using additive noise models, but it faces challenges with confounding. Previous methods maintained LiNGAM's fundamental structure while trying to identify and address variables affected by confounding. As a result, these methods required significant computational resources regardless of the presence of confounding, and they did not ensure the detection of all confounding types. In contrast, this paper enhances LiNGAM by introducing LiNGAM-MMI, a method that quantifies the magnitude of confounding using KL divergence and arranges the variables to minimize its impact. This method efficiently achieves a globally optimal variable order through the shortest path problem formulation. LiNGAM-MMI processes data as efficiently as traditional LiNGAM in scenarios without confounding while effectively addressing confounding situations. Our experimental results suggest that LiNGAM-MMI more accurately determines the correct variable order, both in the presence and absence of confounding.

This work proposes $\mu$GUIDE: a general Bayesian framework to estimate posterior distributions of tissue microstructure parameters from any given biophysical model or MRI signal representation, with exemplar demonstration in diffusion-weighted MRI. Harnessing a new deep learning architecture for automatic signal feature selection combined with simulation-based inference and efficient sampling of the posterior distributions, $\mu$GUIDE bypasses the high computational and time cost of conventional Bayesian approaches and does not rely on acquisition constraints to define model-specific summary statistics. The obtained posterior distributions allow to highlight degeneracies present in the model definition and quantify the uncertainty and ambiguity of the estimated parameters.

We present a comprehensive examination of learning methodologies employed for the structural identification of dynamical systems. These techniques are designed to elucidate emergent phenomena within intricate systems of interacting agents. Our approach not only ensures theoretical convergence guarantees but also exhibits computational efficiency when handling high-dimensional observational data. The methods adeptly reconstruct both first- and second-order dynamical systems, accommodating observation and stochastic noise, intricate interaction rules, absent interaction features, and real-world observations in agent systems. The foundational aspect of our learning methodologies resides in the formulation of tailored loss functions using the variational inverse problem approach, inherently equipping our methods with dimension reduction capabilities.

We study the problem of training diffusion models to sample from a distribution with a given unnormalized density or energy function. We benchmark several diffusion-structured inference methods, including simulation-based variational approaches and off-policy methods (continuous generative flow networks). Our results shed light on the relative advantages of existing algorithms while bringing into question some claims from past work. We also propose a novel exploration strategy for off-policy methods, based on local search in the target space with the use of a replay buffer, and show that it improves the quality of samples on a variety of target distributions. Our code for the sampling methods and benchmarks studied is made public at https://github.com/GFNOrg/gfn-diffusion as a base for future work on diffusion models for amortized inference.

Over the past several decades, conventional spectral analysis techniques of polluted white dwarfs have become powerful tools to learn about the geology and chemistry of extrasolar bodies. Despite their proven capabilities and extensive legacy of scientific discoveries, these techniques are however still limited by their manual, time-intensive, and iterative nature. As a result, they are susceptible to human errors and are difficult to scale up to population-wide studies of metal pollution. This paper seeks to address this problem by presenting cecilia, the first Machine Learning (ML)-powered spectral modeling code designed to measure the metal abundances of intermediate-temperature (10,000$\leq T_{\rm eff} \leq$20,000 K), Helium-rich polluted white dwarfs. Trained with more than 22,000 randomly drawn atmosphere models and stellar parameters, our pipeline aims to overcome the limitations of classical methods by replacing the generation of synthetic spectra from computationally expensive codes and uniformly spaced model grids, with a fast, automated, and efficient neural-network-based interpolator. More specifically, cecilia combines state-of-the-art atmosphere models, powerful artificial intelligence tools, and robust statistical techniques to rapidly generate synthetic spectra of polluted white dwarfs in high-dimensional space, and enable accurate ($\lesssim$0.1 dex) and simultaneous measurements of 14 stellar parameters -- including 11 elemental abundances -- from real spectroscopic observations. As massively multiplexed astronomical surveys begin scientific operations, cecilia's performance has the potential to unlock large-scale studies of extrasolar geochemistry and propel the field of white dwarf science into the era of Big Data. In doing so, we aspire to uncover new statistical insights that were previously impractical with traditional white dwarf characterisation techniques.

Classic Delphi and Fuzzy Delphi methods are used to test content validity of a data collection tools such as questionnaires. Fuzzy Delphi takes the opinion issued by judges from a linguistic perspective reducing ambiguity in opinions by using fuzzy numbers. We propose an extension named 2-Tuple Fuzzy Linguistic Delphi method to deal with scenarios in which judges show different expertise degrees by using fuzzy multigranular semantics of the linguistic terms and to obtain intermediate and final results expressed by 2-tuple linguistic values. The key idea of our proposal is to validate the full questionnaire by means of the evaluation of its parts, defining the validity of each item as a Decision Making problem. Taking the opinion of experts, we measure the degree of consensus, the degree of consistency, and the linguistic score of each item, in order to detect those items that affect, positively or negatively, the quality of the instrument. Considering the real need to evaluate a b-learning educational experience with a consensual questionnaire, we present a Decision Making model for questionnaire validation that solve it. Additionally, we contribute to this consensus reaching problem by developing an online tool under GPL v3 license. The software visualizes the collective valuations for each iteration and assists to determine which parts of the questionnaire should be modified to reach a consensual solution.

Many state-of-the-art causal discovery methods aim to generate an output graph that encodes the graphical separation and connection statements of the causal graph that underlies the data-generating process. In this work, we argue that an evaluation of a causal discovery method against synthetic data should include an analysis of how well this explicit goal is achieved by measuring how closely the separations/connections of the method's output align with those of the ground truth. We show that established evaluation measures do not accurately capture the difference in separations/connections of two causal graphs, and we introduce three new measures of distance called s/c-distance, Markov distance and Faithfulness distance that address this shortcoming. We complement our theoretical analysis with toy examples, empirical experiments and pseudocode.

Prediction of angler behaviors, such as catch rates and angler pressure, is essential to maintaining fish populations and ensuring angler satisfaction. Angler behavior can partly be tracked by online platforms and mobile phone applications that provide fishing activities reported by recreational anglers. Moreover, angler behavior is known to be driven by local site attributes. Here, the prediction of citizen-reported angler behavior was investigated by machine-learning methods using auxiliary data on the environment, socioeconomics, fisheries management objectives, and events at a freshwater body. The goal was to determine whether auxiliary data alone could predict the reported behavior. Different spatial and temporal extents and temporal resolutions were considered. Accuracy scores averaged 88% for monthly predictions at single water bodies and 86% for spatial predictions on a day in a specific region across Canada. At other resolutions and scales, the models only achieved low prediction accuracy of around 60%. The study represents a first attempt at predicting angler behavior in time and space at a large scale and establishes a foundation for potential future expansions in various directions.

Resonances in open quantum systems depending on at least two controllable parameters can show the phenomenon of exceptional points (EPs), where not only the eigenvalues but also the eigenvectors of two or more resonances coalesce. Their exact localization in the parameter space is challenging, in particular in systems, where the computation of the quantum spectra and resonances is numerically very expensive. We introduce an efficient machine learning algorithm to find exceptional points based on Gaussian process regression (GPR). The GPR-model is trained with an initial set of eigenvalue pairs belonging to an EP and used for a first estimation of the EP position via a numerically cheap root search. The estimate is then improved iteratively by adding selected exact eigenvalue pairs as training points to the GPR-model. The GPR-based method is developed and tested on a simple low-dimensional matrix model and then applied to a challenging real physical system, viz., the localization of EPs in the resonance spectra of excitons in cuprous oxide in external electric and magnetic fields. The precise computation of EPs, by taking into account the complete valence band structure and central-cell corrections of the crystal, can be the basis for the experimental observation of EPs in this system.

An open scientific challenge is how to classify events with reliable measures of uncertainty, when we have a mechanistic model of the data-generating process but the distribution over both labels and latent nuisance parameters is different between train and target data. We refer to this type of distributional shift as generalized label shift (GLS). Direct classification using observed data $\mathbf{X}$ as covariates leads to biased predictions and invalid uncertainty estimates of labels $Y$. We overcome these biases by proposing a new method for robust uncertainty quantification that casts classification as a hypothesis testing problem under nuisance parameters. The key idea is to estimate the classifier's receiver operating characteristic (ROC) across the entire nuisance parameter space, which allows us to devise cutoffs that are invariant under GLS. Our method effectively endows a pre-trained classifier with domain adaptation capabilities and returns valid prediction sets while maintaining high power. We demonstrate its performance on two challenging scientific problems in biology and astroparticle physics with data from realistic mechanistic models.