This paper presents a framework designed to tackle a range of planning problems arise in manipulation, which typically involve complex geometric-physical reasoning related to contact and dynamic constraints. We introduce the Contact Factor Graph (CFG) to graphically model these diverse factors, enabling us to perform inference on the graphs to approximate the distribution and sample appropriate solutions. We propose a novel approach that can incorporate various phenomena of contact manipulation as differentiable factors, and develop an efficient inference algorithm for CFG that leverages this differentiability along with the conditional probabilities arising from the structured nature of contact. Our results demonstrate the capability of our framework in generating viable samples and approximating posterior distributions for various manipulation scenarios.

This focused review explores a range of neural operator architectures for approximating solutions to parametric partial differential equations (PDEs), emphasizing high-level concepts and practical implementation strategies. The study covers foundational models such as Deep Operator Networks (DeepONet), Principal Component Analysis-based Neural Networks (PCANet), and Fourier Neural Operators (FNO), providing comparative insights into their core methodologies and performance. These architectures are demonstrated on two classical linear parametric PDEs--the Poisson equation and linear elastic deformation. Beyond forward problem-solving, the review delves into applying neural operators as surrogates in Bayesian inference problems, showcasing their effectiveness in accelerating posterior inference while maintaining accuracy. The paper concludes by discussing current challenges, particularly in controlling prediction accuracy and generalization. It outlines emerging strategies to address these issues, such as residual-based error correction and multi-level training. This review can be seen as a comprehensive guide to implementing neural operators and integrating them into scientific computing workflows.

We perform Bayesian optimization using a Gaussian process perspective on Bayesian Additive Regression Trees (BART). Our BART Kernel (BARK) uses tree agreement to define a posterior over piecewise-constant functions, and we explore the space of tree kernels using a Markov chain Monte Carlo approach. Where BART only samples functions, the resulting BARK model obtains samples of Gaussian processes defining distributions over functions, which allow us to build acquisition functions for Bayesian optimization. Our tree-based approach enables global optimization over the surrogate, even for mixed-feature spaces. Moreover, where many previous tree-based kernels provide uncertainty quantification over function values, our sampling scheme captures uncertainty over the tree structure itself. Our experiments show the strong performance of BARK on both synthetic and applied benchmarks, due to the combination of our fully Bayesian surrogate and the optimization procedure.

We characterize the class of quantum measurements that matches the applications of quantum theory to cognition (and decision making) - quantum-like modeling. Projective measurements describe the canonical measurements of the basic observables of quantum physics. However, the combinations of the basic cognitive effects, such as the question order and response replicability effects, cannot be described by projective measurements. We motivate the use of the special class of quantum measurements, namely {\it sharp repeatable non-projective measurements} - ${\cal SR\bar{P}}. $ This class is practically unused in quantum physics. Thus, physics and cognition explore different parts of quantum measurement theory. Quantum-like modeling isn't automatic borrowing of the quantum formalism. Exploring the class ${\cal SR\bar{P}}$ highlights the role of {\it noncommutativity of the state update maps generated by measurement back action.} Thus, ``non-classicality'' in quantum physics as well as quantum-like modeling for cognition is based on two different types of noncommutativity, of operators (observables) and instruments (state update maps): {\it observable-noncommutativity} vs. {\it state update-noncommutativity}. We speculate that distinguishing quantum-like properties of the cognitive effects are the expressions of the latter, or possibly both.

Despite their outstanding performance in the majority of scenarios, contemporary language models still occasionally generate undesirable outputs, for example, hallucinated text. While such behaviors have previously been linked to uncertainty, there is a notable lack of methods that actively consider uncertainty during text generation. In this work, we show how Minimum Bayes Risk (MBR) decoding, which selects model generations according to an expected risk, can be generalized into a principled uncertainty-aware decoding method. In short, we account for model uncertainty during decoding by incorporating a posterior over model parameters into MBR's computation of expected risk. We show that this modified expected risk is useful for both choosing outputs and deciding when to abstain from generation and can provide improvements without incurring overhead. We benchmark different methods for learning posteriors and show that performance improves with prediction diversity. We release our code publicly.

Evaluating AI safety requires statistically rigorous methods and risk metrics for understanding how the use of AI affects aggregated risk. However, much AI safety literature focuses upon risks arising from AI models in isolation, lacking consideration of how modular use of AI affects risk distribution of workflow components or overall risk metrics. There is also a lack of statistical grounding enabling sensitisation of risk models in the presence of absence of AI to estimate causal contributions of AI. This is in part due to the dearth of AI impact data upon which to fit distributions. In this work, we address these gaps in two ways. First, we demonstrate how scenario modelling (grounded in established statistical techniques such as Markov chains, copulas and Monte Carlo simulation) can be used to model AI risk holistically. Second, we show how lookalike distributions from phenomena analogous to AI can be used to estimate AI impacts in the absence of directly observable data. We demonstrate the utility of our methods for benchmarking cumulative AI risk via risk analysis of a logistic scenario simulations.

Causal inference and the estimation of causal effects plays a central role in decision-making across many areas, including healthcare and economics. Estimating causal effects typically requires an estimator that is tailored to each problem of interest. But developing estimators can take significant effort for even a single causal inference setting. For example, algorithms for regression-based estimators, propensity score methods, and doubly robust methods were designed across several decades to handle causal estimation with observed confounders. Similarly, several estimators have been developed to exploit instrumental variables (IVs), including two-stage least-squares (TSLS), control functions, and the method-of-moments. In this work, we instead frame causal inference as a dataset-level prediction problem, offloading algorithm design to the learning process. The approach we introduce, called black box causal inference (BBCI), builds estimators in a black-box manner by learning to predict causal effects from sampled dataset-effect pairs. We demonstrate accurate estimation of average treatment effects (ATEs) and conditional average treatment effects (CATEs) with BBCI across several causal inference problems with known identification, including problems with less developed estimators.

Active learning aims to efficiently build a labeled training set by strategically selecting samples to query labels from annotators. In this sequential process, each sample acquisition influences subsequent selections, causing dependencies among samples in the labeled set. However, these dependencies are overlooked during the model parameter estimation stage when updating the model using Maximum Likelihood Estimation (MLE), a conventional method that assumes independent and identically distributed (i.i.d.) data. We propose Dependency-aware MLE (DMLE), which corrects MLE within the active learning framework by addressing sample dependencies typically neglected due to the i.i.d. assumption, ensuring consistency with active learning principles in the model parameter estimation process. This improved method achieves superior performance across multiple benchmark datasets, reaching higher performance in earlier cycles compared to conventional MLE. Specifically, we observe average accuracy improvements of 6\%, 8.6\%, and 10.5\% for $k=1$, $k=5$, and $k=10$ respectively, after collecting the first 100 samples, where entropy is the acquisition function and $k$ is the query batch size acquired at every active learning cycle.

Individual treatment effect (ITE) estimation is to evaluate the causal effects of treatment strategies on some important outcomes, which is a crucial problem in healthcare. Most existing ITE estimation methods are designed for centralized settings. However, in real-world clinical scenarios, the raw data are usually not shareable among hospitals due to the potential privacy and security risks, which makes the methods not applicable. In this work, we study the ITE estimation task in a federated setting, which allows us to harness the decentralized data from multiple hospitals. Due to the unavoidable confounding bias in the collected data, a model directly learned from it would be inaccurate. One well-known solution is Inverse Probability Treatment Weighting (IPTW), which uses the conditional probability of treatment given the covariates to re-weight each training example. Applying IPTW in a federated setting, however, is non-trivial. We found that even with a well-estimated conditional probability, the local model training step using each hospital's data alone would still suffer from confounding bias. To address this, we propose FED-IPTW, a novel algorithm to extend IPTW into a federated setting that enforces both global (over all the data) and local (within each hospital) decorrelation between covariates and treatments. We validated our approach on the task of comparing the treatment effects of mechanical ventilation on improving survival probability for patients with breadth difficulties in the intensive care unit (ICU). We conducted experiments on both synthetic and real-world eICU datasets and the results show that FED-IPTW outperform state-of-the-art methods on all the metrics on factual prediction and ITE estimation tasks, paving the way for personalized treatment strategy design in mechanical ventilation usage.

Preprint submitted to Elsevier March 10, 2025 algorithms to solve such inverse-type problems advance different fields including inferring neural circuit dynamics from spiking data [42] in neuroscience, modeling and predicting complex weather patterns from historical data [9] in climate science, uncovering disease transmission dynamics from infection case counts over time [46] in epidemiology, and deducing reaction rates from experimental concentration-time profiles in reaction kinetics in biochemistry [30]. However, such inverse-type problems pose substantial mathematical and computational challenges, particularly when data are limited and noisy, motivating ongoing research into novel algorithms and theoretical frameworks to improve models' reconstruction accuracy and efficiency. In this paper, we study the inverse problem of inferring the distribution of model parameters for several dynamical systems including ordinary differential equations (ODEs), partial differential equations (PDEs), and stochastic differential equations (SDEs) from time-series data or spatiotemporal data. Existing methods for such problems can be broadly categorized into traditional statistical approaches and modern data-driven techniques. Traditional statistical methods often involve parameter estimation frameworks. For example, linear and nonlinear regression methods play a role in simpler systems where the functional form of the model is partially known [13]. Furthermore, maximum likelihood estimation and Bayesian inference methods [16, 33] are often adopted. Maximum likelihood estimation optimizes the likelihood of model parameter values in a proposed model from observed data, while Bayesian methods incorporate prior information and compute posterior distributions. These approaches are widely used in applications such as reaction network reconstruction and epidemiological modeling.