Bayesian Inference
Exploiting Causal Independence in Bayesian Network Inference
A new method is proposed for exploiting causal independencies in exact Bayesian network inference. A Bayesian network can be viewed as representing a factorization of a joint probability into the multiplication of a set of conditional probabilities. We present a notion of causal independence that enables one to further factorize the conditional probabilities into a combination of even smaller factors and consequently obtain a finer-grain factorization of the joint probability. The new formulation of causal independence lets us specify the conditional probability of a variable given its parents in terms of an associative and commutative operator, such as ``or'', ``sum'' or ``max'', on the contribution of each parent. We start with a simple algorithm VE for Bayesian network inference that, given evidence and a query variable, uses the factorization to find the posterior distribution of the query. We show how this algorithm can be extended to exploit causal independence. Empirical studies, based on the CPCS networks for medical diagnosis, show that this method is more efficient than previous methods and allows for inference in larger networks than previous algorithms.
From Data Mining to Knowledge Discovery in Databases
Fayyad, Usama, Piatetsky-Shapiro, Gregory, Smyth, Padhraic
Data mining and knowledge discovery in databases have been attracting a significant amount of research, industry, and media attention of late. What is all the excitement about? This article provides an overview of this emerging field, clarifying how data mining and knowledge discovery in databases are related both to each other and to related fields, such as machine learning, statistics, and databases. The article mentions particular real-world applications, specific data-mining techniques, challenges involved in real-world applications of knowledge discovery, and current and future research directions in the field.
Logarithmic-Time Updates and Queries in Probabilistic Networks
Delcher, A. L., Grove, A. J., Kasif, S., Pearl, J.
Traditional databases commonly support efficient query and update procedures that operate in time which is sublinear in the size of the database. Our goal in this paper is to take a first step toward dynamic reasoning in probabilistic databases with comparable efficiency. We propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks. In the conventional algorithm, new evidence is absorbed in O(1) time and queries are processed in time O(N), where N is the size of the network. We propose an algorithm which, after a preprocessing phase, allows us to answer queries in time O(log N) at the expense of O(log N) time per evidence absorption. The usefulness of sub-linear processing time manifests itself in applications requiring (near) real-time response over large probabilistic databases. We briefly discuss a potential application of dynamic probabilistic reasoning in computational biology.
Bayesian Query Construction for Neural Network Models
Paass, Gerhard, Kindermann, Jรถrg
If data collection is costly, there is much to be gained by actively selecting particularly informative data points in a sequential way. In a Bayesian decision-theoretic framework we develop a query selection criterion which explicitly takes into account the intended use of the model predictions. By Markov Chain Monte Carlo methods the necessary quantities can be approximated to a desired precision. As the number of data points grows, the model complexity is modified by a Bayesian model selection strategy. The properties of two versions of the criterion ate demonstrated in numerical experiments.
Inferring Ground Truth from Subjective Labelling of Venus Images
Smyth, Padhraic, Fayyad, Usama M., Burl, Michael C., Perona, Pietro, Baldi, Pierre
Instead of "ground truth" one may only have the subjective opinion(s) of one or more experts. For example, medical data or image data may be collected off-line and some time later a set of experts analyze the data and produce a set of class labels. The central problem is that of trying to infer the "ground truth" given the noisy subjective estimates of the experts. When one wishes to apply a supervised learning algorithm to the data, the problem is primarily twofold: (i) how to evaluate the relative performance of experts and algorithms, and (ii) how to train a pattern recognition system in the absence of absolute ground truth. In this paper we focus on problem (i), namely the performance evaluation issue, and in particular we discuss the application of a particular modelling technique to the problem of counting volcanoes on the surface of Venus.
Classifying with Gaussian Mixtures and Clusters
Kambhatla, Nanda, Leen, Todd K.
In this paper, we derive classifiers which are winner-take-all (WTA) approximations to a Bayes classifier with Gaussian mixtures for class conditional densities. The derived classifiers include clustering based algorithms like LVQ and k-Means. We propose a constrained rank Gaussian mixtures model and derive a WTA algorithm for it. Our experiments with two speech classification tasks indicate that the constrained rank model and the WTA approximations improve the performance over the unconstrained models. 1 Introduction A classifier assigns vectors from Rn (n dimensional feature space) to one of K classes, partitioning the feature space into a set of K disjoint regions. A Bayesian classifier builds the partition based on a model of the class conditional probability densities of the inputs (the partition is optimal for the given model).
Active Learning for Function Approximation
We develop a principled strategy to sample a function optimally for function approximation tasks within a Bayesian framework. Using ideas from optimal experiment design, we introduce an objective function (incorporating both bias and variance) to measure the degree of approximation, and the potential utility of the data points towards optimizing this objective. We show how the general strategy can be used to derive precise algorithms to select data for two cases: learning unit step functions and polynomial functions. In particular, we investigate whether such active algorithms can learn the target with fewer examples. We obtain theoretical and empirical results to suggest that this is the case. 1 INTRODUCTION AND MOTIVATION Learning from examples is a common supervised learning paradigm that hypothesizes a target concept given a stream of training examples that describes the concept. In function approximation, example-based learning can be formulated as synthesizing an approximation function for data sampled from an unknown target function (Poggio and Girosi, 1990). Active learning describes a class of example-based learning paradigms that seeks out new training examples from specific regions of the input space, instead of passively accepting examples from some data generating source.
Bayesian Query Construction for Neural Network Models
Paass, Gerhard, Kindermann, Jรถrg
If data collection is costly, there is much to be gained by actively selecting particularly informative data points in a sequential way. In a Bayesian decision-theoretic framework we develop a query selection criterion which explicitly takes into account the intended use of the model predictions. By Markov Chain Monte Carlo methods the necessary quantities can be approximated to a desired precision. As the number of data points grows, the model complexity is modified by a Bayesian model selection strategy. The properties of two versions of the criterion ate demonstrated in numerical experiments.
Deterministic Annealing Variant of the EM Algorithm
We present a deterministic annealing variant of the EM algorithm for maximum likelihood parameter estimation problems. In our approach, the EM process is reformulated as the problem of minimizing the thermodynamic free energy by using the principle of maximum entropy and statistical mechanics analogy. Unlike simulated annealing approaches, this minimization is deterministically performed. Moreover, the derived algorithm, unlike the conventional EM algorithm, can obtain better estimates free of the initial parameter values.
A Mixture Model System for Medical and Machine Diagnosis
Stensmo, Magnus, Sejnowski, Terrence J.
Diagnosis of human disease or machine fault is a missing data problem since many variables are initially unknown. Additional information needs to be obtained. The j oint probability distribution of the data can be used to solve this problem. We model this with mixture models whose parameters are estimated by the EM algorithm. This gives the benefit that missing data in the database itself can also be handled correctly. The request for new information to refine the diagnosis is performed using the maximum utility principle. Since the system is based on learning it is domain independent and less labor intensive than expert systems or probabilistic networks. An example using a heart disease database is presented.