Bayesian Inference
Adaptor Grammars: A Framework for Specifying Compositional Nonparametric Bayesian Models
Johnson, Mark, Griffiths, Thomas L., Goldwater, Sharon
This paper introduces adaptor grammars, a class of probabilistic models of language thatgeneralize probabilistic context-free grammars (PCFGs). Adaptor grammars augment the probabilistic rules of PCFGs with "adaptors" that can induce dependenciesamong successive uses. With a particular choice of adaptor, based on the Pitman-Yor process, nonparametric Bayesian models of language using Dirichlet processes and hierarchical Dirichlet processes can be written as simple grammars. We present a general-purpose inference algorithm for adaptor grammars, making it easy to define and use such models, and illustrate how several existing nonparametric Bayesian models can be expressed within this framework.
Bayesian Policy Gradient Algorithms
Ghavamzadeh, Mohammad, Engel, Yaakov
Policy gradient methods are reinforcement learning algorithms that adapt a parameterized policyby following a performance gradient estimate. Conventional policy gradient methods use Monte-Carlo techniques to estimate this gradient. Since Monte Carlo methods tend to have high variance, a large number of samples is required, resulting in slow convergence. In this paper, we propose a Bayesian framework that models the policy gradient as a Gaussian process. This reduces the number of samples needed to obtain accurate gradient estimates. Moreover, estimates of the natural gradient as well as a measure of the uncertainty in the gradient estimates are provided at little extra cost.
A Bayesian Approach to Diffusion Models of Decision-Making and Response Time
Lee, Michael D., Fuss, Ian G., Navarro, Daniel J.
We present a computational Bayesian approach for Wiener diffusion models, which are prominent accounts of response time distributions in decision-making. We first develop a general closed-form analytic approximation to the response time distributions for one-dimensional diffusion processes, and derive the required Wiener diffusion as a special case. We use this result to undertake Bayesian modeling ofbenchmark data, using posterior sampling to draw inferences about the interesting psychological parameters. With the aid of the benchmark data, we show the Bayesian account has several advantages, including dealing naturally with the parameter variation needed to account for some key features of the data, and providing quantitative measures to guide decisions about model construction.
Hidden Markov Dirichlet Process: Modeling Genetic Recombination in Open Ancestral Space
We present a new statistical framework called hidden Markov Dirichlet process (HMDP) to jointly model the genetic recombinations among possibly infinite number of founders and the coalescence-with-mutation events in the resulting genealogies. TheHMDP posits that a haplotype of genetic markers is generated by a sequence of recombination events that select an ancestor for each locus from an unbounded set of founders according to a 1st-order Markov transition process. Conjoining this process with a mutation model, our method accommodates both between-lineage recombination and within-lineage sequence variations, and leads to a compact and natural interpretation of the population structure and inheritance process underlying haplotype data. We have developed an efficient sampling algorithm forHMDP based on a two-level nested Pรณlya urn scheme. On both simulated and real SNP haplotype data, our method performs competitively or significantly better than extant methods in uncovering the recombination hotspots along chromosomal loci;and in addition it also infers the ancestral genetic patterns and offers a highly accurate map of ancestral compositions of modern populations.
Learning Time-Intensity Profiles of Human Activity using Non-Parametric Bayesian Models
Ihler, Alexander T., Smyth, Padhraic
Data sets that characterize human activity over time through collections of timestamped eventsor counts are of increasing interest in application areas as humancomputer interaction,video surveillance, and Web data analysis. We propose a nonparametric Bayesian framework for modeling collections of such data. In particular, we use a Dirichlet process framework for learning a set of intensity functions corresponding to different categories, which form a basis set for representing individualtime-periods (e.g., several days) depending on which categories the time-periods are assigned to. This allows the model to learn in a data-driven fashion what "factors" are generating the observations on a particular day, including (forexample) weekday versus weekend effects or day-specific effects corresponding tounique (single-day) occurrences of unusual behavior, sharing information where appropriate to obtain improved estimates of the behavior associated with each category. Applications to real-world data sets of count data involving both vehicles and people are used to illustrate the technique.
Theory and Dynamics of Perceptual Bistability
Schrater, Paul R., Sundareswara, Rashmi
Perceptual Bistability refers to the phenomenon of spontaneously switching between twoor more interpretations of an image under continuous viewing. Although switchingbehavior is increasingly well characterized, the origins remain elusive. We propose that perceptual switching naturally arises from the brain's search for best interpretations while performing Bayesian inference. In particular, we propose that the brain explores a posterior distribution over image interpretations ata rapid time scale via a sampling-like process and updates its interpretation when a sampled interpretation is better than the discounted value of its current interpretation. Weformalize the theory, explicitly derive switching rate distributions and discuss qualitative properties of the theory including the effect of changes in the posterior distribution on switching rates. Finally, predictions of the theory are shown to be consistent with measured changes in human switching dynamics to Necker cube stimuli induced by context.