We introduce a nonparametric approach for estimating drift and diffusion functions in systems of stochastic differential equations from observations of the state vector. Gaussian processes are used as flexible models for these functions and estimates are calculated directly from dense data sets using Gaussian process regression. We also develop an approximate expectation maximization algorithm to deal with the unobserved, latent dynamics between sparse observations. The posterior over states is approximated by a piecewise linearized process of the Ornstein-Uhlenbeck type and the maximum a posteriori estimation of the drift is facilitated by a sparse Gaussian process approximation.

In the last few months, I have had several people contact me about their enthusiasm for venturing into the world of data science and using Machine Learning (ML) techniques to probe statistical regularities and build impeccable data-driven products. However, I've observed that some actually lack the necessary mathematical intuition and framework to get useful results. This is the main reason I decided to write this blog post. Recently, there has been an upsurge in the availability of many easy-to-use machine and deep learning packages such as scikit-learn, Weka, Tensorflow etc. Machine Learning theory is a field that intersects statistical, probabilistic, computer science and algorithmic aspects arising from learning iteratively from data and finding hidden insights which can be used to build intelligent applications. Despite the immense possibilities of Machine and Deep Learning, a thorough mathematical understanding of many of these techniques is necessary for a good grasp of the inner workings of the algorithms and getting good results. There are many reasons why the mathematics of Machine Learning is important and I'll highlight some of them below: The main question when trying to understand an interdisciplinary field such as Machine Learning is the amount of maths necessary and the level of maths needed to understand these techniques.

We propose an empirical Bayes estimator based on Dirichlet process mixture model for estimating the sparse normalized mean difference, which could be directly applied to the high dimensional linear classification. In theory, we build a bridge to connect the estimation error of the mean difference and the misclassification error, also provide sufficient conditions of sub-optimal classifiers and optimal classifiers. In implementation, a variational Bayes algorithm is developed to compute the posterior efficiently and could be parallelized to deal with the ultra-high dimensional case.

We introduce a semi-supervised discrete choice model to calibrate discrete choice models when relatively few requests have both choice sets and stated preferences but the majority only have the choice sets. Two classic semi-supervised learning algorithms, the expectation maximization algorithm and the cluster-and-label algorithm, have been adapted to our choice modeling problem setting. We also develop two new algorithms based on the cluster-and-label algorithm. The new algorithms use the Bayesian Information Criterion to evaluate a clustering setting to automatically adjust the number of clusters. Two computational studies including a hotel booking case and a large-scale airline itinerary shopping case are presented to evaluate the prediction accuracy and computational effort of the proposed algorithms. Algorithmic recommendations are rendered under various scenarios.

Adaptive sampling theory has shown that, with proper assumptions on the signal class, algorithms exist to reconstruct a signal in $\mathbb{R}^{d}$ with an optimal number of samples. We generalize this problem to the case of spatial signals, where the sampling cost is a function of both the number of samples taken and the distance traveled during estimation. This is motivated by our work studying regions of low oxygen concentration in the Great Lakes. We show that for one-dimensional threshold classifiers, a tradeoff between the number of samples taken and distance traveled can be achieved using a generalization of binary search, which we refer to as quantile search. We characterize both the estimation error after a fixed number of samples and the distance traveled in the noiseless case, as well as the estimation error in the case of noisy measurements. We illustrate our results in both simulations and experiments and show that our method outperforms existing algorithms in the majority of practical scenarios.

In the last few months, I have had several people contact me about their enthusiasm for venturing into the world of data science and using Machine Learning (ML) techniques to probe statistical regularities and build impeccable data-driven products. However, I've observed that some actually lack the necessary mathematical intuition and framework to get useful results. This is the main reason I decided to write this blog post. Recently, there has been an upsurge in the availability of many easy-to-use machine and deep learning packages such as scikit-learn, Weka, Tensorflow etc. Machine Learning theory is a field that intersects statistical, probabilistic, computer science and algorithmic aspects arising from learning iteratively from data and finding hidden insights which can be used to build intelligent applications. Despite the immense possibilities of Machine and Deep Learning, a thorough mathematical understanding of many of these techniques is necessary for a good grasp of the inner workings of the algorithms and getting good results.

Multi-label classification is a type of supervised learning where an instance may belong to multiple labels simultaneously. Predicting each label independently has been criticized for not exploiting any correlation between labels. In this paper we propose a novel approach, Nearest Labelset using Double Distances (NLDD), that predicts the labelset observed in the training data that minimizes a weighted sum of the distances in both the feature space and the label space to the new instance. The weights specify the relative tradeoff between the two distances. The weights are estimated from a binomial regression of the number of misclassified labels as a function of the two distances. Model parameters are estimated by maximum likelihood. NLDD only considers labelsets observed in the training data, thus implicitly taking into account label dependencies. Experiments on benchmark multi-label data sets show that the proposed method on average outperforms other well-known approaches in terms of Hamming loss, 0/1 loss, and multi-label accuracy and ranks second after ECC on the F-measure.

The reconstruction of an object's shape or surface from a set of 3D points plays an important role in medical image analysis, e.g. in anatomy reconstruction from tomographic measurements or in the process of aligning intra-operative navigation and preoperative planning data. In such scenarios, one usually has to deal with sparse data, which significantly aggravates the problem of reconstruction. However, medical applications often provide contextual information about the 3D point data that allow to incorporate prior knowledge about the shape that is to be reconstructed. To this end, we propose the use of a statistical shape model (SSM) as a prior for surface reconstruction. The SSM is represented by a point distribution model (PDM), which is associated with a surface mesh. Using the shape distribution that is modelled by the PDM, we formulate the problem of surface reconstruction from a probabilistic perspective based on a Gaussian Mixture Model (GMM). In order to do so, the given points are interpreted as samples of the GMM. By using mixture components with anisotropic covariances that are "oriented" according to the surface normals at the PDM points, a surface-based fitting is accomplished. Estimating the parameters of the GMM in a maximum a posteriori manner yields the reconstruction of the surface from the given data points. We compare our method to the extensively used Iterative Closest Points method on several different anatomical datasets/SSMs (brain, femur, tibia, hip, liver) and demonstrate superior accuracy and robustness on sparse data.

Weighted model counting (WMC) has recently emerged as an effective and general approach to probabilistic inference, offering a computational framework for encoding a variety of formalisms, such as factor graphs and Bayesian networks.The advent of large-scale probabilistic knowledge bases has generated further interest in relational probabilistic representations, obtained by according weights to first-order formulas, whose semantics is given in terms of the ground theory, and solved by WMC. A fundamental limitation is that the domain of quantification, by construction and design, is assumed to be finite, which is at odds with areas such as vision and language understanding, where the existence of objects must be inferred from raw data. Dropping the finite-domain assumption has been known to improve the expressiveness of a first-order language for open-universe purposes, but these languages, so far, have eluded WMC approaches. In this paper, we revisit relational probabilistic models over an infinite domain, and establish a number of results that permit effective algorithms. We demonstrate this language on a number of examples, including a parameterized version of Pearl's Burglary-Earthquake-Alarm Bayesian network.

Structured knowledge about concepts plays an increasingly important role in areas such as information retrieval. The available ontologies and knowledge graphs that encode such conceptual knowledge, however, are inevitably incomplete. This observation has led to a number of methods that aim to automatically complete existing knowledge bases. Unfortunately, most existing approaches rely on black box models, e.g. formulated as global optimization problems, which makes it difficult to support the underlying reasoning process with intuitive explanations. In this paper, we propose a new method for knowledge base completion, which uses interpretable conceptual space representations and an explicit model for inductive inference that is closer to human forms of commonsense reasoning. Moreover, by separating the task of representation learning from inductive reasoning, our method is easier to apply in a wider variety of contexts. Finally, unlike optimization based approaches, our method can naturally be applied in settings where various logical constraints between the extensions of concepts need to be taken into account.