A Temporal Knowledge Graph (TKG) is a sequence of KGs with respective timestamps, which adopts quadruples in the form of ( subject, relation, object, timestamp) to describe dynamic facts. TKG reasoning has facilitated many real-world applications via answering such queries as ( query entity, query relation,?, future timestamp) about future. This is actually a matching task between a query and candidate entities based on their historical structures, which reflect behavioral trends of the entities at different timestamps. In addition, recent KGs provide background knowledge of all the entities, which is also helpful for the matching. Thus, in this paper, we propose the Hi storical Structure Matching ( HiSMatch) model. It applies two structure encoders to capture the semantic information contained in the historical structures of the query and candidate entities. Besides, it adopts another encoder to integrate the background knowledge into the model. TKG reasoning experiments on six benchmark datasets demonstrate the significant improvement of the proposed HiSMatch model, with up to 5.6% performance improvement in MRR, compared to the state-of-the-art baselines.

The task of entity alignment between knowledge graphs (KGs) aims to identify every pair of entities from two different KGs that represent the same entity. Many machine learning-based methods have been proposed for this task. However, to our best knowledge, existing methods all require manually crafted seed alignments, which are expensive to obtain. In this paper, we propose the first fully automatic alignment method named TransAlign, which does not require any manually crafted seed alignments. Specifically, for predicate embeddings, TransAlign constructs a predicate-proximity-graph to automatically capture the similarity between predicates across two KGs by learning the attention of entity types. For entity embeddings, TransAlign first computes the entity embeddings of each KG independently using TransE, and then shifts the two KGs' entity embeddings into the same vector space by computing the similarity between entities based on their attributes. Thus, both predicate alignment and entity alignment can be done without manually crafted seed alignments. TransAlign is not only fully automatic, but also highly effective. Experiments using real-world KGs show that TransAlign improves the accuracy of entity alignment significantly compared to state-of-the-art methods.

In this paper, we investigate a realistic but underexplored problem, called few-shot temporal knowledge graph reasoning, that aims to predict future facts for newly emerging entities based on extremely limited observations in evolving graphs. It offers practical value in applications that need to derive instant new knowledge about new entities in temporal knowledge graphs (TKGs) with minimal supervision. The challenges mainly come from the few-shot and time shift properties of new entities. First, the limited observations associated with them are insufficient for training a model from scratch. Second, the potentially dynamic distributions from the initially observable facts to the future facts ask for explicitly modeling the evolving characteristics of new entities. We correspondingly propose a novel Meta Temporal Knowledge Graph Reasoning (MetaTKGR) framework. Unlike prior work that relies on rigid neighborhood aggregation schemes to enhance low-data entity representation, MetaTKGR dynamically adjusts the strategies of sampling and aggregating neighbors from recent facts for new entities, through temporally supervised signals on future facts as instant feedback. Besides, such a meta temporal reasoning procedure goes beyond existing meta-learning paradigms on static knowledge graphs that fail to handle temporal adaptation with large entity variance. We further provide a theoretical analysis and propose a temporal adaptation regularizer to stabilize the meta temporal reasoning over time. Empirically, extensive experiments on three real-world TKGs demonstrate the superiority of MetaTKGR over state-of-the-art baselines by a large margin.

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on disseminating knowledge about the mechanisms of certain biological processes. A knowledge graph (KG) can be constructed by integrating such facts and data and be used for data integration, exploration, and federated queries. However, exploration and querying large-scale KGs is tedious for certain groups of users due to a lack of knowledge about underlying data assets or semantic technologies. A question-answering (QA) system allows the answer of natural language questions over KGs automatically using triples contained in a KG.

Knowledge Graph Embedding models have become an important area of machine learning.Those models provide a latent representation of entities and relations in a knowledge graph which can then be used in downstream machine learning tasks such as link prediction. The learning process of such models can be performed by contrasting positive and negative triples. While all triples of a KG are considered positive, negative triples are usually not readily available. Therefore, the choice of the sampling method to obtain the negative triples play a crucial role in the performance and effectiveness of Knowledge Graph Embedding models. Most of the current methods fetch negative samples from a random distribution of entities in the underlying Knowledge Graph which also often includes meaningless triples. Other known methods use adversarial techniques or generative neural networks which consequently reduce the efficiency of the process. In this paper, we propose an approach for generating informative negative samples considering available complementary knowledge about entities. Particularly, Pre-trained Language Models are used to form neighborhood clusters by utilizing the distances between entities to obtain representations of symbolic entities via their textual information. Our comprehensive evaluations demonstrate the effectiveness of the proposed approach on benchmark Knowledge Graphs with textual information for the link prediction task.

Knowledge graph (KG) embedding techniques use structured relationships between entities to learn low-dimensional representations of entities and relations. The traditional KG embedding techniques (such as TransE and DistMult) estimate these embeddings via simple models developed over observed KG triplets. These approaches differ in their triplet scoring loss functions. As these models only use the observed triplets to estimate the embeddings, they are prone to suffer through data sparsity that usually occurs in the real-world knowledge graphs, i.e., the lack of enough triplets per entity. To settle this issue, we propose an efficient method to augment the number of triplets to address the problem of data sparsity. We use random walks to create additional triplets, such that the relations carried by these introduced triplets entail the metapath induced by the random walks. We also provide approaches to accurately and efficiently filter out informative metapaths from the possible set of metapaths, induced by the random walks. The proposed approaches are model-agnostic, and the augmented training dataset can be used with any KG embedding approach out of the box. Experimental results obtained on the benchmark datasets show the advantages of the proposed approach.

Knowledge graphs, as the cornerstone of many AI applications, usually face serious incompleteness problems. In recent years, there have been many efforts to study automatic knowledge graph completion (KGC), most of which use existing knowledge to infer new knowledge. However, in our experiments, we find that not all relations can be obtained by inference, which constrains the performance of existing models. To alleviate this problem, we propose a new model based on information retrieval and reading comprehension, namely IR4KGC. Specifically, we pre-train a knowledge-based information retrieval module that can retrieve documents related to the triples to be completed. Then, the retrieved documents are handed over to the reading comprehension module to generate the predicted answers. In experiments, we find that our model can well solve relations that cannot be inferred from existing knowledge, and achieve good results on KGC datasets.

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on disseminating knowledge about the mechanisms of certain biological processes. A knowledge graph (KG) can be constructed by integrating such facts and data and be used for data integration, exploration, and federated queries. However, exploration and querying large-scale KGs is tedious for certain groups of users due to a lack of knowledge about underlying data assets or semantic technologies. A question-answering (QA) system allows the answer of natural language questions over KGs automatically using triples contained in a KG. Recently, the use and adaption of digital assistants are getting wider owing to their capability at enabling users to voice commands to control smart systems or devices. This paper is about using Amazon Alexa's voice-enabled interface for QA over KGs. As a proof-of-concept, we use the well-known DisgeNET KG, which contains knowledge covering 1.13 million gene-disease associations between 21,671 genes and 30,170 diseases, disorders, and clinical or abnormal human phenotypes. Our study shows how Alex could be of help to find facts about certain biological entities from large-scale knowledge bases.

This paper addresses the task of conversational question answering (ConvQA) over knowledge graphs (KGs). The majority of existing ConvQA methods rely on full supervision signals with a strict assumption of the availability of gold logical forms of queries to extract answers from the KG. However, creating such a gold logical form is not viable for each potential question in a real-world scenario. Hence, in the case of missing gold logical forms, the existing information retrieval-based approaches use weak supervision via heuristics or reinforcement learning, formulating ConvQA as a KG path ranking problem. Despite missing gold logical forms, an abundance of conversational contexts, such as entire dialog history with fluent responses and domain information, can be incorporated to effectively reach the correct KG path. This work proposes a contrastive representation learning-based approach to rank KG paths effectively. Our approach solves two key challenges. Firstly, it allows weak supervision-based learning that omits the necessity of gold annotations. Second, it incorporates the conversational context (entire dialog history and domain information) to jointly learn its homogeneous representation with KG paths to improve contrastive representations for effective path ranking. We evaluate our approach on standard datasets for ConvQA, on which it significantly outperforms existing baselines on all domains and overall. Specifically, in some cases, the Mean Reciprocal Rank (MRR) and Hit@5 ranking metrics improve by absolute 10 and 18 points, respectively, compared to the state-of-the-art performance.

Medical text learning has recently emerged as a promising area to improve healthcare due to the wide adoption of electronic health record (EHR) systems. The complexity of the medical text such as diverse length, mixed text types, and full of medical jargon, poses a great challenge for developing effective deep learning models. BERT has presented state-of-the-art results in many NLP tasks, such as text classification and question answering. However, the standalone BERT model cannot deal with the complexity of the medical text, especially the lengthy clinical notes. Herein, we develop a new model called KG-MTT-BERT (Knowledge Graph Enhanced Multi-Type Text BERT) by extending the BERT model for long and multi-type text with the integration of the medical knowledge graph. Our model can outperform all baselines and other state-of-the-art models in diagnosis-related group (DRG) classification, which requires comprehensive medical text for accurate classification. We also demonstrated that our model can effectively handle multi-type text and the integration of medical knowledge graph can significantly improve the performance.