Knowledge Graph Completion has been increasingly adopted as a useful method for several tasks in biomedical research, like drug repurposing or drug-target identification. To that end, a variety of datasets and Knowledge Graph Embedding models has been proposed over the years. However, little is known about the properties that render a dataset useful for a given task and, even though theoretical properties of Knowledge Graph Embedding models are well understood, their practical utility in this field remains controversial. We conduct a comprehensive investigation into the topological properties of publicly available biomedical Knowledge Graphs and establish links to the accuracy observed in real-world applications. By releasing all model predictions and a new suite of analysis tools we invite the community to build upon our work and continue improving the understanding of these crucial applications.

Recommendation systems play a crucial role in helping users filter through vast amounts of information. However, traditional recommendation algorithms often overlook the integration and utilization of multi-source information, limiting system performance. Therefore, this study proposes a novel recommendation model, Knowledge Graph Attention-assisted Network (KGAT-AX). We first incorporate the knowledge graph into the recommendation model, introducing an attention mechanism to explore higher order connectivity more explicitly. By using multilayer interactive information propagation, the model aggregates information to enhance its generalization ability. Furthermore, we integrate auxiliary information into entities through holographic embeddings, aggregating the information of adjacent entities for each entity by learning their inferential relationships. This allows for better utilization of auxiliary information associated with entities. We conducted experiments on real datasets to demonstrate the rationality and effectiveness of the KGAT-AX model. Through experimental analysis, we observed the effectiveness and potential of KGAT-AX compared to other baseline models on public datasets. KGAT-AX demonstrates better knowledge information capture and relationship learning capabilities.

Recently, there has been an increasing interest in the construction of general-domain and domain-specific causal knowledge graphs. Such knowledge graphs enable reasoning for causal analysis and event prediction, and so have a range of applications across different domains. While great progress has been made toward automated construction of causal knowledge graphs, the evaluation of such solutions has either focused on low-level tasks (e.g., cause-effect phrase extraction) or on ad hoc evaluation data and small manual evaluations. In this Resource Track paper, we present a corpus, task, and evaluation framework for causal knowledge graph construction. Our corpus consists of Wikipedia articles for a collection of event-related concepts in Wikidata. The task is to extract causal relations between event concepts from the corpus. The evaluation is performed in part using existing causal relations in Wikidata to measure recall, and in part using Large Language Models to avoid the need for manual or crowd-sourced evaluation. We evaluate a pipeline for causal knowledge graph construction that relies on neural models for question answering and concept linking, and show how the corpus and the evaluation framework allow us to effectively find the right model for each task. The corpus and the evaluation framework are publicly available.

Temporal knowledge graph (TKG) reasoning predicts future events based on historical data, but it's challenging due to the complex semantic and hierarchical information involved. Existing Euclidean models excel at capturing semantics but struggle with hierarchy. Conversely, hyperbolic models manage hierarchical features well but fail to represent complex semantics due to limitations in shallow models' parameters and the absence of proper normalization in deep models relying on the L2 norm. Current solutions, as curvature transformations, are insufficient to address these issues. In this work, a novel hybrid geometric space approach that leverages the strengths of both Euclidean and hyperbolic models is proposed. Our approach transitions from single-space to multi-space parameter modeling, effectively capturing both semantic and hierarchical information. Initially, complex semantics are captured through a fact co-occurrence and autoregressive method with normalizations in Euclidean space. The embeddings are then transformed into Tangent space using a scaling mechanism, preserving semantic information while relearning hierarchical structures through a query-candidate separated modeling approach, which are subsequently transformed into Hyperbolic space. Finally, a hybrid inductive bias for hierarchical and semantic learning is achieved by combining hyperbolic and Euclidean scoring functions through a learnable query-specific mixing coefficient, utilizing embeddings from hyperbolic and Euclidean spaces. Experimental results on four TKG benchmarks demonstrate that our method reduces error relatively by up to 15.0% in mean reciprocal rank on YAGO compared to previous single-space models. Additionally, enriched visualization analysis validates the effectiveness of our approach, showing adaptive capabilities for datasets with varying levels of semantic and hierarchical complexity.

Developing novel predictive models with complex biomedical information is challenging due to various idiosyncrasies related to heterogeneity, standardization or sparseness of the data. We previously introduced a person-centric ontology to organize information about individual patients, and a representation learning framework to extract person-centric knowledge graphs (PKGs) and to train Graph Neural Networks (GNNs). In this paper, we propose a systematic approach to examine the results of GNN models trained with both structured and unstructured information from the MIMIC-III dataset. Through ablation studies on different clinical, demographic, and social data, we show the robustness of this approach in identifying predictive features in PKGs for the task of readmission prediction.

In this paper, we investigate the use of probabilistic graphical models, specifically stochastic blockmodels, for the purpose of hierarchical entity clustering on knowledge graphs. These models, seldom used in the Semantic Web community, decompose a graph into a set of probability distributions. The parameters of these distributions are then inferred allowing for their subsequent sampling to generate a random graph. In a non-parametric setting, this allows for the induction of hierarchical clusterings without prior constraints on the hierarchy's structure. Specifically, this is achieved by the integration of the Nested Chinese Restaurant Process and the Stick Breaking Process into the generative model. In this regard, we propose a model leveraging such integration and derive a collapsed Gibbs sampling scheme for its inference. To aid in understanding, we describe the steps in this derivation and provide an implementation for the sampler. We evaluate our model on synthetic and real-world datasets and quantitatively compare against benchmark models. We further evaluate our results qualitatively and find that our model is capable of inducing coherent cluster hierarchies in small scale settings. The work presented in this paper provides the first step for the further application of stochastic blockmodels for knowledge graphs on a larger scale. We conclude the paper with potential avenues for future work on more scalable inference schemes.

The problem of career trajectory prediction (CTP) aims to predict one's future employer or job position. While several CTP methods have been developed for this problem, we posit that none of these methods (1) jointly considers the mutual ternary dependency between three key units (i.e., user, position, and company) of a career and (2) captures the characteristic shifts of key units in career over time, leading to an inaccurate understanding of the job movement patterns in the labor market. To address the above challenges, we propose a novel solution, named as CAPER, that solves the challenges via sophisticated temporal knowledge graph (TKG) modeling. It enables the utilization of a graph-structured knowledge base with rich expressiveness, effectively preserving the changes in job movement patterns. Furthermore, we devise an extrapolated career reasoning task on TKG for a realistic evaluation. The experiments on a real-world career trajectory dataset demonstrate that CAPER consistently and significantly outperforms four baselines, two recent TKG reasoning methods, and five state-of-the-art CTP methods in predicting one's future companies and positions-i.e., on average, yielding 6.80% and 34.58% more accurate predictions, respectively.

Numerous methods and pipelines have recently emerged for the automatic extraction of knowledge graphs from documents such as scientific publications and patents. However, adapting these methods to incorporate alternative text sources like micro-blogging posts and news has proven challenging as they struggle to model open-domain entities and relations, typically found in these sources. In this paper, we propose an enhanced information extraction pipeline tailored to the extraction of a knowledge graph comprising open-domain entities from micro-blogging posts on social media platforms. Our pipeline leverages dependency parsing and classifies entity relations in an unsupervised manner through hierarchical clustering over word embeddings. We provide a use case on extracting semantic triples from a corpus of 100 thousand tweets about digital transformation and publicly release the generated knowledge graph. On the same dataset, we conduct two experimental evaluations, showing that the system produces triples with precision over 95% and outperforms similar pipelines of around 5% in terms of precision, while generating a comparatively higher number of triples.

Multi-modal knowledge graphs (MMKGs), which ground various non-symbolic data (e.g., images and videos) into symbols, have attracted attention as resources enabling knowledge processing and machine learning across modalities. However, the construction of MMKGs for videos consisting of multiple events, such as daily activities, is still in the early stages. In this paper, we construct an MMKG based on synchronized multi-view simulated videos of daily activities. Besides representing the content of daily life videos as event-centric knowledge, our MMKG also includes frame-by-frame fine-grained changes, such as bounding boxes within video frames. In addition, we provide support tools for querying our MMKG. As an application example, we demonstrate that our MMKG facilitates benchmarking vision-language models by providing the necessary vision-language datasets for a tailored task.

Multi-hop query answering over a Knowledge Graph (KG) involves traversing one or more hops from the start node to answer a query. Path-based and logic-based methods are state-of-the-art for multi-hop question answering. The former is used in link prediction tasks. The latter is for answering complex logical queries. The logical multi-hop querying technique embeds the KG and queries in the same embedding space. The existing work incorporates First Order Logic (FOL) operators, such as conjunction ($\wedge$), disjunction ($\vee$), and negation ($\neg$), in queries. Though current models have most of the building blocks to execute the FOL queries, they cannot use the dense information of multi-modal entities in the case of Multi-Modal Knowledge Graphs (MMKGs). We propose RConE, an embedding method to capture the multi-modal information needed to answer a query. The model first shortlists candidate (multi-modal) entities containing the answer. It then finds the solution (sub-entities) within those entities. Several existing works tackle path-based question-answering in MMKGs. However, to our knowledge, we are the first to introduce logical constructs in querying MMKGs and to answer queries that involve sub-entities of multi-modal entities as the answer. Extensive evaluation of four publicly available MMKGs indicates that RConE outperforms the current state-of-the-art.