I look forward to the final version including more details about the tests, as requested by reviewer 2.] This paper studies the presence of social biases in contextualized word representations. First, word co-occurnce statistics of pronouns and stereotypical occupations are provided for various datasets used for training contextualizers. Then, the word/sentence embedding association test is extended for the contextual case. Using templates, instead of aggregating over word representations (in sentence test) or taking the context-free word embedding (in word test), the contextual word representation is used. Then, an association test compares the association between a concept and an attribute using a permutation test.

The authors here find that in contextualized embeddings yielded from modern neural LMs, biases persist. This is an important finding. Reviewers expressed some concerns regarding the experimental setup and metrics, but felt these were adequately addressed by the author response.

Biomedical knowledge graphs (BKGs) have emerged as powerful tools for organizing and leveraging the vast and complex data found across the biomedical field. Yet, current reviews of BKGs often limit their scope to specific domains or methods, overlooking the broader landscape and the rapid technological progress reshaping it. In this survey, we address this gap by offering a systematic review of BKGs from three core perspectives: domains, tasks, and applications. We begin by examining how BKGs are constructed from diverse data sources, including molecular interactions, pharmacological datasets, and clinical records. Next, we discuss the essential tasks enabled by BKGs, focusing on knowledge management, retrieval, reasoning, and interpretation. Finally, we highlight real-world applications in precision medicine, drug discovery, and scientific research, illustrating the translational impact of BKGs across multiple sectors. By synthesizing these perspectives into a unified framework, this survey not only clarifies the current state of BKG research but also establishes a foundation for future exploration, enabling both innovative methodological advances and practical implementations.

Authors propose DRUM, an end-to-end differentiable rule-based inference method which can be used for mining rules via backprop, and extracting rules from data. Their approach is quite interesting - it can be trained from positive examples only, without negative sampling (this is currently a burden for representation learning algorithms targeting knowledge graphs). In DRUM, paths in a knowledge graph are represented by a chain of matrix multiplications (this idea is not especially novel - see [1]). For mining rules, authors start from a formulation of the problem where each rule is associated with a confidence weight, and try to maximise the likelihood of training triples by optimising an end-to-end differentiable objective. However, the space of possible rules (and thus the number of parameters as confidence scores) is massive, so authors propose a way of efficiently approximating the rule scores tensor using with another having a lower rank (Eq.

Some of the most successful knowledge graph embedding (KGE) models for link prediction – CP, RESCAL, TuckER, ComplEx – can be interpreted as energy-based models. Under this perspective they are not amenable for exact maximum-likelihood estimation (MLE), sampling and struggle to integrate logical constraints. This work re-interprets the score functions of these KGEs as circuits – constrained computational graphs allowing efficient marginalisation. Then, we design two recipes to obtain efficient generative circuit models by either restricting their activations to be non-negative or squaring their outputs. Our interpretation comes with little or no loss of performance for link prediction, while the circuits framework unlocks exact learning by MLE, efficient sampling of new triples, and guarantee that logical constraints are satisfied by design.

Multi-hop logical reasoning over knowledge graph plays a fundamental role in many artificial intelligence tasks. Recent complex query embedding methods for reasoning focus on static KGs, while temporal knowledge graphs have not been fully explored. Reasoning over TKGs has two challenges: 1. The query should answer entities or timestamps; 2. The operators should consider both set logic on entity set and temporal logic on timestamp set.To bridge this gap, we introduce the multi-hop logical reasoning problem on TKGs and then propose the first temporal complex query embedding named Temporal Feature-Logic Embedding framework (TFLEX) to answer the temporal complex queries. Specifically, we utilize fuzzy logic to compute the logic part of the Temporal Feature-Logic embedding, thus naturally modeling all first-order logic operations on the entity set.

Accurate Urban SpatioTemporal Prediction (USTP) is of great importance to the development and operation of the smart city. As an emerging building block, multi-sourced urban data are usually integrated as urban knowledge graphs (UrbanKGs) to provide critical knowledge for urban spatiotemporal prediction models. However, existing UrbanKGs are often tailored for specific downstream prediction tasks and are not publicly available, which limits the potential advancement. This paper presents UUKG, the unified urban knowledge graph dataset for knowledge-enhanced urban spatiotemporal predictions. Specifically, we first construct UrbanKGs consisting of millions of triplets for two metropolises by connecting heterogeneous urban entities such as administrative boroughs, POIs, and road segments. Moreover, we conduct qualitative and quantitative analysis on constructed UrbanKGs and uncover diverse high-order structural patterns, such as hierarchies and cycles, that can be leveraged to benefit downstream USTP tasks.

Reasoning on large-scale knowledge graphs has been long dominated by embedding methods. While path-based methods possess the inductive capacity that embeddings lack, their scalability is limited by the exponential number of paths. Here we present A*Net, a scalable path-based method for knowledge graph reasoning. Inspired by the A* algorithm for shortest path problems, our A*Net learns a priority function to select important nodes and edges at each iteration, to reduce time and memory footprint for both training and inference. The ratio of selected nodes and edges can be specified to trade off between performance and efficiency.

Multi-modal knowledge graph embeddings (KGE) have caught more and more attention in learning representations of entities and relations for link prediction tasks. Different from previous uni-modal KGE approaches, multi-modal KGE can leverage expressive knowledge from a wealth of modalities (image, text, etc.), leading to more comprehensive representations of real-world entities. However, the critical challenge along this course lies in that the multi-modal embedding spaces are usually heterogeneous. In this sense, direct fusion will destroy the inherent spatial structure of different modal embeddings. To overcome this challenge, we revisit multi-modal KGE from a distributional alignment perspective and propose optimal transport knowledge graph embeddings (OTKGE). Theoretically, we show that by minimizing the Wasserstein distance between the individual modalities and the unified embedding space, the final results are guaranteed to maintain consistency and comprehensiveness.

Pretraining a language model (LM) on text has been shown to help various downstream NLP tasks. Recent works show that a knowledge graph (KG) can complement text data, offering structured background knowledge that provides a useful scaffold for reasoning. However, these works are not pretrained to learn a deep fusion of the two modalities at scale, limiting the potential to acquire fully joint representations of text and KG. Here we propose DRAGON (Deep Bidirectional Language-Knowledge Graph Pretraining), a self-supervised approach to pretraining a deeply joint language-knowledge foundation model from text and KG at scale. Specifically, our model takes pairs of text segments and relevant KG subgraphs as input and bidirectionally fuses information from both modalities.