Many optimization algorithm benchmarking platforms allow users to share their experimental data to promote reproducible and reusable research. However, different platforms use different data models and formats, which drastically complicates the identification of relevant datasets, their interpretation, and their interoperability. Therefore, a semantically rich, ontology-based, machine-readable data model that can be used by different platforms is highly desirable. In this paper, we report on the development of such an ontology, which we call OPTION (OPTImization algorithm benchmarking ONtology). Our ontology provides the vocabulary needed for semantic annotation of the core entities involved in the benchmarking process, such as algorithms, problems, and evaluation measures. It also provides means for automatic data integration, improved interoperability, and powerful querying capabilities, thereby increasing the value of the benchmarking data. We demonstrate the utility of OPTION, by annotating and querying a corpus of benchmark performance data from the BBOB collection of the COCO framework and from the Yet Another Black-Box Optimization Benchmark (YABBOB) family of the Nevergrad environment. In addition, we integrate features of the BBOB functional performance landscape into the OPTION knowledge base using publicly available datasets with exploratory landscape analysis. Finally, we integrate the OPTION knowledge base into the IOHprofiler environment and provide users with the ability to perform meta-analysis of performance data.

The design of complex engineering systems is an often long and articulated process that highly relies on engineers' expertise and professional judgment. As such, the typical pitfalls of activities involving the human factor often manifest themselves in terms of lack of completeness or exhaustiveness of the analysis, inconsistencies across design choices or documentation, as well as an implicit degree of subjectivity. An approach is proposed to assist systems engineers in the automatic generation of systems diagrams from unstructured natural language text. Natural Language Processing (NLP) techniques are used to extract entities and their relationships from textual resources (e.g., specifications, manuals, technical reports, maintenance reports) available within an organisation, and convert them into Systems Modelling Language (SysML) diagrams, with particular focus on structure and requirement diagrams. The intention is to provide the users with a more standardised, comprehensive and automated starting point onto which subsequently refine and adapt the diagrams according to their needs. The proposed approach is flexible and open-domain. It consists of six steps which leverage open-access tools, and it leads to an automatic generation of SysML diagrams without intermediate modelling requirement, but through the specification of a set of parameters by the user. The applicability and benefits of the proposed approach are shown through six case studies having different textual sources as inputs, and benchmarked against manually defined diagram elements.

Flexible metadata pipelines are crucial for supporting the FAIR data principles. Despite this need, researchers seldom report their approaches for identifying metadata standards and protocols that support optimal flexibility. This paper reports on an initiative targeting the development of a flexible metadata pipeline for a collection containing over 300,000 digital fish specimen images, harvested from multiple data repositories and fish collections. The images and their associated metadata are being used for AI-related scientific research involving automated species identification, segmentation and trait extraction. The paper provides contextual background, followed by the presentation of a four-phased approach involving: 1. Assessment of the Problem, 2. Investigation of Solutions, 3. Implementation, and 4. Refinement. The work is part of the NSF Harnessing the Data Revolution, Biology Guided Neural Networks (NSF/HDR-BGNN) project and the HDR Imageomics Institute. An RDF graph prototype pipeline is presented, followed by a discussion of research implications and conclusion summarizing the results.

In this work we propose a novel end-to-end multi-stage Knowledge Graph (KG) generation system from textual inputs, separating the overall process into two stages. The graph nodes are generated first using pretrained language model, followed by a simple edge construction head, enabling efficient KG extraction from the text. For each stage we consider several architectural choices that can be used depending on the available training resources. We evaluated the model on a recent WebNLG 2020 Challenge dataset, matching the state-of-the-art performance on text-to-RDF generation task, as well as on New York Times (NYT) and a large-scale TekGen datasets, showing strong overall performance, outperforming the existing baselines. We believe that the proposed system can serve as a viable KG construction alternative to the existing linearization or sampling-based graph generation approaches. Our code can be found at https://github.com/IBM/Grapher

Ontology operations, e.g., aligning and merging, were studied and implemented extensively in different settings, such as, categorical operations, relation algebras, typed graph grammars, with different concerns. However, aligning and merging operations in the settings share some generic properties, e.g., idempotence, commutativity, associativity, and representativity, labeled by (I), (C), (A), and (R), respectively, which are defined on an ontology merging system $(\mathfrak{O},\sim,\merge)$, where $\mathfrak{O}$ is a set of the ontologies concerned, $\sim$ is a binary relation on $\mathfrak{O}$ modeling ontology aligning and $\merge$ is a partial binary operation on $\mathfrak{O}$ modeling ontology merging. Given an ontology repository, a finite set $\mathbb{O}\subseteq \mathfrak{O}$, its merging closure $\widehat{\mathbb{O}}$ is the smallest set of ontologies, which contains the repository and is closed with respect to merging. If (I), (C), (A), and (R) are satisfied, then both $\mathfrak{O}$ and $\widehat{\mathbb{O}}$ are partially ordered naturally by merging, $\widehat{\mathbb{O}}$ is finite and can be computed efficiently, including sorting, selecting, and querying some specific elements, e.g., maximal ontologies and minimal ontologies. We also show that the ontology merging system, given by ontology $V$-alignment pairs and pushouts, satisfies the properties: (I), (C), (A), and (R) so that the merging system is partially ordered and the merging closure of a given repository with respect to pushouts can be computed efficiently.

This paper presents BigCilin, the first Chinese open-domain knowledge graph with fine-grained hypernym-hyponym re-lations which are extracted automatically from multiple sources for Chinese named entities. With the fine-grained hypernym-hyponym relations, BigCilin owns flexible semantic hierarchical structure. Since the hypernym-hyponym paths are automati-cally generated and one entity may have several senses, we provide a path disambi-guation solution to map a hypernym-hyponym path of one entity to its one sense on the condition that the path and the sense express the same meaning. In order to conveniently access our BigCilin Knowle-dge graph, we provide web interface in two ways. One is that it supports querying any Chinese named entity and browsing the extracted hypernym-hyponym paths surro-unding the query entity. The other is that it gives a top-down browsing view to illust-rate the overall hierarchical structure of our BigCilin knowledge graph over some sam-pled entities.

In this paper, we present a new theoretical approach for enabling domain knowledge acquisition by intelligent systems. We introduce a hybrid model that starts with minimal input knowledge in the form of an upper ontology of concepts, stores and reasons over this knowledge through a knowledge graph database and learns new information through a Logic Neural Network. We study the behavior of this architecture when handling new data and show that the final system is capable of enriching its current knowledge as well as extending it to new domains.

Industry 4.0 envisions Cyber-Physical Production Systems (CPPSs) to foster adaptive production of mass-customizable products. Manufacturing approaches based on capabilities and skills aim to support this adaptability by encapsulating machine functions and decoupling them from specific production processes. At the 2022 IEEE conference on Emerging Technologies and Factory Automation (ETFA), a special session on capability- and skill-based manufacturing is hosted for the fourth time. However, an overview on capability- and skill based systems in factory automation and manufacturing systems is missing. This paper aims to provide such an overview and give insights to this particular field of research. We conducted a concise literature survey of papers covering the topics of capabilities and skills in manufacturing from the last ten years of the ETFA conference. We found 247 papers with a notion on capabilities and skills and identified and analyzed 34 relevant papers which met this survey's inclusion criteria. In this paper, we provide (i) an overview of the research field, (ii) an analysis of the characteristics of capabilities and skills, and (iii) a discussion on gaps and opportunities.

While there exist approaches to integrate heterogeneous data using semantic models, such semantic models can typically not be used by existing software tools. Many software tools - especially in engineering - only have options to import and export data in more established data interchange formats such as XML or JSON. Thus, if an information which is included in a semantic model needs to be used in a such a software tool, automatic approaches for mapping semantic information into an interchange format are needed. We aim to develop a generic mapping approach that allows users to create transformations of semantic information into a data interchange format with an arbitrary structure which can be defined by a user. This mapping approach is currently being elaborated. In this contribution, we report our initial steps targeted to transformations from RDF into XML. At first, a mapping language is introduced which allows to define automated mappings from ontologies to XML. Furthermore, a mapping algorithm capable of executing mappings defined in this language is presented. An evaluation is done with a use case in which engineering information needs to be used in a 3D modeling tool.

Medical term normalization consists in mapping a piece of text to a large number of output classes. Given the small size of the annotated datasets and the extremely long tail distribution of the concepts, it is of utmost importance to develop models that are capable to generalize to scarce or unseen concepts. An important attribute of most target ontologies is their hierarchical structure. In this paper we introduce a simple and effective learning strategy that leverages such information to enhance the generalizability of both discriminative and generative models. The evaluation shows that the proposed strategy produces state-of-the-art performance on seen concepts and consistent improvements on unseen ones, allowing also for efficient zero-shot knowledge transfer across text typologies and datasets.