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 Ontologies


From human experts to machines: An LLM supported approach to ontology and knowledge graph construction

arXiv.org Artificial Intelligence

The conventional process of building Ontologies and Knowledge Graphs (KGs) heavily relies on human domain experts to define entities and relationship types, establish hierarchies, maintain relevance to the domain, fill the ABox (or populate with instances), and ensure data quality (including amongst others accuracy and completeness). On the other hand, Large Language Models (LLMs) have recently gained popularity for their ability to understand and generate human-like natural language, offering promising ways to automate aspects of this process. This work explores the (semi-)automatic construction of KGs facilitated by open-source LLMs. Our pipeline involves formulating competency questions (CQs), developing an ontology (TBox) based on these CQs, constructing KGs using the developed ontology, and evaluating the resultant KG with minimal to no involvement of human experts. We showcase the feasibility of our semi-automated pipeline by creating a KG on deep learning methodologies by exploiting scholarly publications. To evaluate the answers generated via Retrieval-Augmented-Generation (RAG) as well as the KG concepts automatically extracted using LLMs, we design a judge LLM, which rates the generated content based on ground truth. Our findings suggest that employing LLMs could potentially reduce the human effort involved in the construction of KGs, although a human-in-the-loop approach is recommended to evaluate automatically generated KGs.


Couler: Unified Machine Learning Workflow Optimization in Cloud

arXiv.org Artificial Intelligence

Machine Learning (ML) has become ubiquitous, fueling data-driven applications across various organizations. Contrary to the traditional perception of ML in research, ML workflows can be complex, resource-intensive, and time-consuming. Expanding an ML workflow to encompass a wider range of data infrastructure and data types may lead to larger workloads and increased deployment costs. Currently, numerous workflow engines are available (with over ten being widely recognized). This variety poses a challenge for end-users in terms of mastering different engine APIs. While efforts have primarily focused on optimizing ML Operations (MLOps) for a specific workflow engine, current methods largely overlook workflow optimization across different engines. In this work, we design and implement Couler, a system designed for unified ML workflow optimization in the cloud. Our main insight lies in the ability to generate an ML workflow using natural language (NL) descriptions. We integrate Large Language Models (LLMs) into workflow generation, and provide a unified programming interface for various workflow engines. This approach alleviates the need to understand various workflow engines' APIs. Moreover, Couler enhances workflow computation efficiency by introducing automated caching at multiple stages, enabling large workflow auto-parallelization and automatic hyperparameters tuning. These enhancements minimize redundant computational costs and improve fault tolerance during deep learning workflow training. Couler is extensively deployed in real-world production scenarios at Ant Group, handling approximately 22k workflows daily, and has successfully improved the CPU/Memory utilization by more than 15% and the workflow completion rate by around 17%.


RoboCertProb: Property Specification for Probabilistic RoboChart Models

arXiv.org Artificial Intelligence

RoboChart is a core notation in the RoboStar framework which brings modern modelling and formal verification technologies into software engineering for robotics. It is a timed and probabilistic domain-specific language for robotics and provides a UML-like architectural and state machine modelling. This work presents RoboCertProb for specifying quantitative properties of probabilistic robotic systems modelled in RoboChart. RoboCertProb's semantics is based on PCTL*. To interpret RoboCertProb over RoboChart models, we give a Markov semantics (DTMCs and MDPs) to RoboChart, derived from its existing transformation semantics to the PRISM language. In addition to property specification, RoboCertProb also entitles us to configure loose constants and unspecified functions and operations in RoboChart models. It allows us to set up environmental inputs to verify reactive probabilistic systems not directly supported in probabilistic model checkers like PRISM because they employ a closed-world assumption. We implement RoboCertProb in an accompanying tool of RoboChart, RoboTool, for specifying properties and automatically generating PRISM properties from them to formally verify RoboChart models using PRISM. We have used it to analyse the behaviour of software controllers for two real robots: an industrial painting robot and an agricultural robot for treating plants with UV lights.


Perennial Semantic Data Terms of Use for Decentralized Web

arXiv.org Artificial Intelligence

In today's digital landscape, the Web has become increasingly centralized, raising concerns about user privacy violations. Decentralized Web architectures, such as Solid, offer a promising solution by empowering users with better control over their data in their personal `Pods'. However, a significant challenge remains: users must navigate numerous applications to decide which application can be trusted with access to their data Pods. This often involves reading lengthy and complex Terms of Use agreements, a process that users often find daunting or simply ignore. This compromises user autonomy and impedes detection of data misuse. We propose a novel formal description of Data Terms of Use (DToU), along with a DToU reasoner. Users and applications specify their own parts of the DToU policy with local knowledge, covering permissions, requirements, prohibitions and obligations. Automated reasoning verifies compliance, and also derives policies for output data. This constitutes a ``perennial'' DToU language, where the policy authoring only occurs once, and we can conduct ongoing automated checks across users, applications and activity cycles. Our solution is built on Turtle, Notation 3 and RDF Surfaces, for the language and the reasoning engine. It ensures seamless integration with other semantic tools for enhanced interoperability. We have successfully integrated this language into the Solid framework, and conducted performance benchmark. We believe this work demonstrates a practicality of a perennial DToU language and the potential of a paradigm shift to how users interact with data and applications in a decentralized Web, offering both improved privacy and usability.


A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Prediction

arXiv.org Artificial Intelligence

Recently, ontology embeddings representing entities in a low-dimensional space have been proposed for ontology completion. However, the ontology embeddings for concept subsumption prediction do not address the difficulties of similar and isolated entities and fail to extract the global information of annotation axioms from an ontology. In this paper, we propose a self-matching training method for the two ontology embedding models: Inverted-index Matrix Embedding (InME) and Co-occurrence Matrix Embedding (CoME). The two embeddings capture the global and local information in annotation axioms by means of the occurring locations of each word in a set of axioms and the co-occurrences of words in each axiom. The self-matching training method increases the robustness of the concept subsumption prediction when predicted superclasses are similar to subclasses and are isolated to other entities in an ontology. Our evaluation experiments show that the self-matching training method with InME outperforms the existing ontology embeddings for the GO and FoodOn ontologies and that the method with the concatenation of CoME and OWL2Vec* outperforms them for the HeLiS ontology.


Enhancing Multi-Hop Knowledge Graph Reasoning through Reward Shaping Techniques

arXiv.org Artificial Intelligence

In the realm of computational knowledge representation, Knowledge Graph Reasoning (KG-R) stands at the forefront of facilitating sophisticated inferential capabilities across multifarious domains. The quintessence of this research elucidates the employment of reinforcement learning (RL) strategies, notably the REINFORCE algorithm, to navigate the intricacies inherent in multi-hop KG-R. This investigation critically addresses the prevalent challenges introduced by the inherent incompleteness of Knowledge Graphs (KGs), which frequently results in erroneous inferential outcomes, manifesting as both false negatives and misleading positives. By partitioning the Unified Medical Language System (UMLS) benchmark dataset into rich and sparse subsets, we investigate the efficacy of pre-trained BERT embeddings and Prompt Learning methodologies to refine the reward shaping process. This approach not only enhances the precision of multi-hop KG-R but also sets a new precedent for future research in the field, aiming to improve the robustness and accuracy of knowledge inference within complex KG frameworks. Our work contributes a novel perspective to the discourse on KG reasoning, offering a methodological advancement that aligns with the academic rigor and scholarly aspirations of the Natural journal, promising to invigorate further advancements in the realm of computational knowledge representation.


End-to-end solution for linked open data query logs analytics

arXiv.org Artificial Intelligence

In big data Era, significant advances in e-commerce, targeted marketing, social shopping, e-tourism, etc. are derived basically from collective intelligence. Such applications mainly exploit data generated by users to extract different valuable information. User content represents data, information, or media content voluntarily provided by people Krumm et al. [2008], when they interact with web sites, social media, and data sources, etc. This data regroups social data, YouTube videos, blogs and micro-blogs, query-logs, etc. Analysis of this data provides useful information helping to understand user behavior, user opinions, topics of interest, etc. It helps to detect hidden patterns and to construct users' profiles, in order to propose user-centric solutions like: recommendation systems, content personalization, cache improvement, etc. for successful user experience.


Know your exceptions: Towards an Ontology of Exceptions in Knowledge Representation

arXiv.org Artificial Intelligence

Defeasible reasoning is a kind of reasoning where some generalisations may not be valid in all circumstances, that is general conclusions may fail in some cases. Various formalisms have been developed to model this kind of reasoning, which is characteristic of common-sense contexts. However, it is not easy for a modeller to choose among these systems the one that better fits its domain from an ontological point of view. In this paper we first propose a framework based on the notions of exceptionality and defeasibility in order to be able to compare formalisms and reveal their ontological commitments. Then, we apply this framework to compare four systems, showing the differences that may occur from an ontological perspective.


A Language Model based Framework for New Concept Placement in Ontologies

arXiv.org Artificial Intelligence

We investigate the task of inserting new concepts extracted from texts into an ontology using language models. We explore an approach with three steps: edge search which is to find a set of candidate locations to insert (i.e., subsumptions between concepts), edge formation and enrichment which leverages the ontological structure to produce and enhance the edge candidates, and edge selection which eventually locates the edge to be placed into. In all steps, we propose to leverage neural methods, where we apply embedding-based methods and contrastive learning with Pre-trained Language Models (PLMs) such as BERT for edge search, and adapt a BERT fine-tuning-based multi-label Edge-Cross-encoder, and Large Language Models (LLMs) such as GPT series, FLAN-T5, and Llama 2, for edge selection. We evaluate the methods on recent datasets created using the SNOMED CT ontology and the MedMentions entity linking benchmark. The best settings in our framework use fine-tuned PLM for search and a multi-label Cross-encoder for selection. Zero-shot prompting of LLMs is still not adequate for the task, and we propose explainable instruction tuning of LLMs for improved performance. Our study shows the advantages of PLMs and highlights the encouraging performance of LLMs that motivates future studies.


Commonsense Ontology Micropatterns

arXiv.org Artificial Intelligence

The previously introduced Modular Ontology Modeling methodology (MOMo) attempts to mimic the human analogical process by using modular patterns to assemble more complex concepts. To support this, MOMo organizes organizes ontology design patterns into design libraries, which are programmatically queryable, to support accelerated ontology development, for both human and automated processes. However, a major bottleneck to large-scale deployment of MOMo is the (to-date) limited availability of ready-to-use ontology design patterns. At the same time, Large Language Models have quickly become a source of common knowledge and, in some cases, replacing search engines for questions. In this paper, we thus present a collection of 104 ontology design patterns representing often occurring nouns, curated from the common-sense knowledge available in LLMs, organized into a fully-annotated modular ontology design library ready for use with MOMo.