For natural language understanding and generation, embedding concepts using an order-based representation is an essential task. Unlike traditional point vector based representation, an order-based representation imposes geometric constraints on the representation vectors for explicitly capturing various semantic relationships that may exist between a pair of concepts. In existing literature, several approaches on order-based embedding have been proposed, mostly focusing on capturing hierarchical relationships; examples include vectors in Euclidean space, complex, Hyperbolic, order, and Box Embedding. Box embedding creates region-based rich representation of concepts, but along the process it sacrifices simplicity, requiring a custom-made optimization scheme for learning the representation. Hyperbolic embedding improves embedding quality by exploiting the ever-expanding property of Hyperbolic space, but it also suffers from the same fate as box embedding as gradient descent like optimization is not simple in the Hyperbolic space. In this work, we propose Binder, a novel approach for order-based representation. Binder uses binary vectors for embedding, so the embedding vectors are compact with an order of magnitude smaller footprint than other methods. Binder uses a simple and efficient optimization scheme for learning representation vectors with a linear time complexity. Our comprehensive experimental results show that Binder is very accurate, yielding competitive results on the representation task. But Binder stands out from its competitors on the transitive closure link prediction task as it can learn concept embeddings just from the direct edges, whereas all existing order-based approaches rely on the indirect edges.

The exponential growth of scientific literature requires effective management and extraction of valuable insights. While existing scientific search engines excel at delivering search results based on relational databases, they often neglect the analysis of collaborations between scientific entities and the evolution of ideas, as well as the in-depth analysis of content within scientific publications. The representation of heterogeneous graphs and the effective measurement, analysis, and mining of such graphs pose significant challenges. To address these challenges, we present AceMap, an academic system designed for knowledge discovery through academic graph. We present advanced database construction techniques to build the comprehensive AceMap database with large-scale academic entities that contain rich visual, textual, and numerical information. AceMap also employs innovative visualization, quantification, and analysis methods to explore associations and logical relationships among academic entities. AceMap introduces large-scale academic network visualization techniques centered on nebular graphs, providing a comprehensive view of academic networks from multiple perspectives. In addition, AceMap proposes a unified metric based on structural entropy to quantitatively measure the knowledge content of different academic entities. Moreover, AceMap provides advanced analysis capabilities, including tracing the evolution of academic ideas through citation relationships and concept co-occurrence, and generating concise summaries informed by this evolutionary process. In addition, AceMap uses machine reading methods to generate potential new ideas at the intersection of different fields. Exploring the integration of large language models and knowledge graphs is a promising direction for future research in idea evolution. Please visit \url{https://www.acemap.info} for further exploration.

The creation of high-quality ontologies is crucial for data integration and knowledge-based reasoning, specifically in the context of the rising data economy. However, automatic ontology matchers are often bound to the heuristics they are based on, leaving many matches unidentified. Interactive ontology matching systems involving human experts have been introduced, but they do not solve the fundamental issue of flexibly finding additional matches outside the scope of the implemented heuristics, even though this is highly demanded in industrial settings. Active machine learning methods appear to be a promising path towards a flexible interactive ontology matcher. However, off-the-shelf active learning mechanisms suffer from low query efficiency due to extreme class imbalance, resulting in a last-mile problem where high human effort is required to identify the remaining matches. To address the last-mile problem, this work introduces DualLoop, an active learning method tailored to ontology matching. DualLoop offers three main contributions: (1) an ensemble of tunable heuristic matchers, (2) a short-term learner with a novel query strategy adapted to highly imbalanced data, and (3) long-term learners to explore potential matches by creating and tuning new heuristics. We evaluated DualLoop on three datasets of varying sizes and domains. Compared to existing active learning methods, we consistently achieved better F1 scores and recall, reducing the expected query cost spent on finding 90% of all matches by over 50%. Compared to traditional interactive ontology matchers, we are able to find additional, last-mile matches. Finally, we detail the successful deployment of our approach within an actual product and report its operational performance results within the Architecture, Engineering, and Construction (AEC) industry sector, showcasing its practical value and efficiency.

Parkinson's disease is a progressive and slowly developing neurodegenerative disease, characterized by dopaminergic neuron loss in the substantia nigra region of the brain. Despite extensive research by scientists, there is not yet a cure to this problem and the available therapies mainly help to reduce some of the Parkinson's symptoms. Drug repurposing (that is, the process of finding new uses for existing drugs) receives more appraisals as an efficient way that allows for reducing the time, resources, and risks associated with the development of new drugs. In this research, we design a novel computational platform that integrates gene expression data, biological networks, and the PDOD database to identify possible drug-repositioning agents for PD therapy. By using machine learning approaches like the RWR algorithm and PDOD scoring system we arrange drug-disease conversions and sort our potential sandboxes according to their possible efficacy. We propose gene expression analysis, network prioritization, and drug target data analysis to arrive at a comprehensive evaluation of drug repurposing chances. Our study results highlight such therapies as promising drug candidates to conduct further research on PD treatment. We also provide the rationale for promising drug repurposing ideas by using various sources of data and computational approaches.

Concept-based explainable AI is promising as a tool to improve the understanding of complex models at the premises of a given user, viz.\ as a tool for personalized explainability. An important class of concept-based explainability methods is constructed with empirically defined concepts, indirectly defined through a set of positive and negative examples, as in the TCAV approach (Kim et al., 2018). While it is appealing to the user to avoid formal definitions of concepts and their operationalization, it can be challenging to establish relevant concept datasets. Here, we address this challenge using general knowledge graphs (such as, e.g., Wikidata or WordNet) for comprehensive concept definition and present a workflow for user-driven data collection in both text and image domains. The concepts derived from knowledge graphs are defined interactively, providing an opportunity for personalization and ensuring that the concepts reflect the user's intentions. We test the retrieved concept datasets on two concept-based explainability methods, namely concept activation vectors (CAVs) and concept activation regions (CARs) (Crabbe and van der Schaar, 2022). We show that CAVs and CARs based on these empirical concept datasets provide robust and accurate explanations. Importantly, we also find good alignment between the models' representations of concepts and the structure of knowledge graphs, i.e., human representations. This supports our conclusion that knowledge graph-based concepts are relevant for XAI.

Sourcing and identification of new manufacturing partners is crucial for manufacturing system integrators to enhance agility and reduce risk through supply chain diversification in the global economy. The advent of advanced large language models has captured significant interest, due to their ability to generate comprehensive and articulate responses across a wide range of knowledge domains. However, the system often falls short in accuracy and completeness when responding to domain-specific inquiries, particularly in areas like manufacturing service discovery. This research explores the potential of leveraging Knowledge Graphs in conjunction with ChatGPT to streamline the process for prospective clients in identifying small manufacturing enterprises. In this study, we propose a method that integrates bottom-up ontology with advanced machine learning models to develop a Manufacturing Service Knowledge Graph from an array of structured and unstructured data sources, including the digital footprints of small-scale manufacturers throughout North America. The Knowledge Graph and the learned graph embedding vectors are leveraged to tackle intricate queries within the digital supply chain network, responding with enhanced reliability and greater interpretability. The approach highlighted is scalable to millions of entities that can be distributed to form a global Manufacturing Service Knowledge Network Graph that can potentially interconnect multiple types of Knowledge Graphs that span industry sectors, geopolitical boundaries, and business domains. The dataset developed for this study, now publicly accessible, encompasses more than 13,000 manufacturers' weblinks, manufacturing services, certifications, and location entity types.

Background. Endowing intelligent systems with semantic data commonly requires designing and instantiating ontologies with domain-specific knowledge. Especially in the early phases, those activities are typically performed manually by human experts possibly leveraging on their own experience. The resulting process is therefore time-consuming, error-prone, and often biased by the personal background of the ontology designer. Objective. To mitigate that issue, we propose a novel domain-independent approach to automatically instantiate ontologies with domain-specific knowledge, by leveraging on large language models (LLMs) as oracles. Method. Starting from (i) an initial schema composed by inter-related classes andproperties and (ii) a set of query templates, our method queries the LLM multiple times, and generates instances for both classes and properties from its replies. Thus, the ontology is automatically filled with domain-specific knowledge, compliant to the initial schema. As a result, the ontology is quickly and automatically enriched with manifold instances, which experts may consider to keep, adjust, discard, or complement according to their own needs and expertise. Contribution. We formalise our method in general way and instantiate it over various LLMs, as well as on a concrete case study. We report experiments rooted in the nutritional domain where an ontology of food meals and their ingredients is semi-automatically instantiated from scratch, starting from a categorisation of meals and their relationships. There, we analyse the quality of the generated ontologies and compare ontologies attained by exploiting different LLMs. Finally, we provide a SWOT analysis of the proposed method.

The Artificial Intelligence Ontology (AIO) is a systematization of artificial intelligence (AI) concepts, methodologies, and their interrelations. Developed via manual curation, with the additional assistance of large language models (LLMs), AIO aims to address the rapidly evolving landscape of AI by providing a comprehensive framework that encompasses both technical and ethical aspects of AI technologies. The primary audience for AIO includes AI researchers, developers, and educators seeking standardized terminology and concepts within the AI domain. The ontology is structured around six top-level branches: Networks, Layers, Functions, LLMs, Preprocessing, and Bias, each designed to support the modular composition of AI methods and facilitate a deeper understanding of deep learning architectures and ethical considerations in AI. AIO's development utilized the Ontology Development Kit (ODK) for its creation and maintenance, with its content being dynamically updated through AI-driven curation support. This approach not only ensures the ontology's relevance amidst the fast-paced advancements in AI but also significantly enhances its utility for researchers, developers, and educators by simplifying the integration of new AI concepts and methodologies. The ontology's utility is demonstrated through the annotation of AI methods data in a catalog of AI research publications and the integration into the BioPortal ontology resource, highlighting its potential for cross-disciplinary research.

Cooperative manufacturing is a new trend in industry, which depends on the existence of a collaborative robot. A collaborative robot is usually a light-weight robot which is capable of operating safely with a human co-worker in a shared work environment. During this cooperation, a vast amount of information is exchanged between the collaborative robot and the worker. This information constructs the cooperative manufacturing knowledge, which describes the production components and environment. In this research, we propose a holonic control solution, which uses the ontology concept to represent the cooperative manufacturing knowledge. The holonic control solution is implemented as an autonomous multi-agent system that exchanges the manufacturing knowledge based on an ontology model. Ultimately, the research illustrates and implements the proposed solution over a cooperative assembly scenario, which involves two workers and one collaborative robot, whom cooperate together to assemble a customized product.

We consider the problem of finding plausible knowledge that is missing from a given ontology, as a generalisation of the well-studied taxonomy expansion task. One line of work treats this task as a Natural Language Inference (NLI) problem, thus relying on the knowledge captured by language models to identify the missing knowledge. Another line of work uses concept embeddings to identify what different concepts have in common, taking inspiration from cognitive models for category based induction. These two approaches are intuitively complementary, but their effectiveness has not yet been compared. In this paper, we introduce a benchmark for evaluating ontology completion methods and thoroughly analyse the strengths and weaknesses of both approaches. We find that both approaches are indeed complementary, with hybrid strategies achieving the best overall results. We also find that the task is highly challenging for Large Language Models, even after fine-tuning.