Ontologies
Enhancing Object Search in Indoor Spaces via Personalized Object-factored Ontologies
Chikhalikar, Akash, Ravankar, Ankit A., Luces, Jose Victorio Salazar, Hirata, Yasuhisa
Personalization is critical for the advancement of service robots. Robots need to develop tailored understandings of the environments they are put in. Moreover, they need to be aware of changes in the environment to facilitate long-term deployment. Long-term understanding as well as personalization is necessary to execute complex tasks like prepare dinner table or tidy my room. A precursor to such tasks is that of Object Search. Consequently, this paper focuses on locating and searching multiple objects in indoor environments. In this paper, we propose two crucial novelties. Firstly, we propose a novel framework that can enable robots to deduce Personalized Ontologies of indoor environments. Our framework consists of a personalization schema that enables the robot to tune its understanding of ontologies. Secondly, we propose an Adaptive Inferencing strategy. We integrate Dynamic Belief Updates into our approach which improves performance in multi-object search tasks. The cumulative effect of personalization and adaptive inferencing is an improved capability in long-term object search. This framework is implemented on top of a multi-layered semantic map. We conduct experiments in real environments and compare our results against various state-of-the-art (SOTA) methods to demonstrate the effectiveness of our approach. Additionally, we show that personalization can act as a catalyst to enhance the performance of SOTAs. Video Link: https://bit.ly/3WHk9i9
Quantum AGI: Ontological Foundations
Perrier, Elija, Bennett, Michael Timothy
We examine the implications of quantum foundations for AGI, focusing on how seminal results such as Bell's theorems (non-locality), the Kochen-Specker theorem (contextuality) and no-cloning theorem problematise practical implementation of AGI in quantum settings. We introduce a novel information-theoretic taxonomy distinguishing between classical AGI and quantum AGI and show how quantum mechanics affects fundamental features of agency. We show how quantum ontology may change AGI capabilities, both via affording computational advantages and via imposing novel constraints.
On Immutable Memory Systems for Artificial Agents: A Blockchain-Indexed Automata-Theoretic Framework Using ECDH-Keyed Merkle Chains
This paper presents a formalised architecture for synthetic agents designed to retain immutable memory, verifiable reasoning, and constrained epistemic growth. Traditional AI systems rely on mutable, opaque statistical models prone to epistemic drift and historical revisionism. In contrast, we introduce the concept of the Merkle Automaton, a cryptographically anchored, deterministic computational framework that integrates formal automata theory with blockchain-based commitments. Each agent transition, memory fragment, and reasoning step is committed within a Merkle structure rooted on-chain, rendering it non-repudiable and auditably permanent. To ensure selective access and confidentiality, we derive symmetric encryption keys from ECDH exchanges contextualised by hierarchical privilege lattices. This enforces cryptographic access control over append-only DAG-structured knowledge graphs. Reasoning is constrained by formal logic systems and verified through deterministic traversal of policy-encoded structures. Updates are non-destructive and historied, preserving epistemic lineage without catastrophic forgetting. Zero-knowledge proofs facilitate verifiable, privacy-preserving inclusion attestations. Collectively, this architecture reframes memory not as a cache but as a ledger - one whose contents are enforced by protocol, bound by cryptography, and constrained by formal logic. The result is not an intelligent agent that mimics thought, but an epistemic entity whose outputs are provably derived, temporally anchored, and impervious to post hoc revision. This design lays foundational groundwork for legal, economic, and high-assurance computational systems that require provable memory, unforgeable provenance, and structural truth.
Vector Ontologies as an LLM world view extraction method
Rothenfusser, Kaspar, Blando, Bekk
Large Language Models (LLMs) possess intricate internal representations of the world, yet these latent structures are notoriously difficult to interpret or repurpose beyond the original prediction task. Building on our earlier work (Rothenfusser, 2025), which introduced the concept of vector ontologies as a framework for translating high-dimensional neural representations into interpretable geometric structures, this paper provides the first empirical validation of that approach. A vector ontology defines a domain-specific vector space spanned by ontologically meaningful dimensions, allowing geometric analysis of concepts and relationships within a domain. We construct an 8-dimensional vector ontology of musical genres based on Spotify audio features and test whether an LLM's internal world model of music can be consistently and accurately projected into this space. Using GPT-4o-mini, we extract genre representations through multiple natural language prompts and analyze the consistency of these projections across linguistic variations and their alignment with ground-truth data. Our results show (1) high spatial consistency of genre projections across 47 query formulations, (2) strong alignment between LLM-inferred genre locations and real-world audio feature distributions, and (3) evidence of a direct relationship between prompt phrasing and spatial shifts in the LLM's inferred vector ontology. These findings demonstrate that LLMs internalize structured, repurposable knowledge and that vector ontologies offer a promising method for extracting and analyzing this knowledge in a transparent and verifiable way.
Cognitive Synergy Architecture: SEGO for Human-Centric Collaborative Robots
This paper presents SEGO (Semantic Graph Ontology), a cognitive mapping architecture designed to integrate geometric perception, semantic reasoning, and explanation generation into a unified framework for human-centric collaborative robotics. SEGO constructs dynamic cognitive scene graphs that represent not only the spatial configuration of the environment but also the semantic relations and ontological consistency among detected objects. The architecture seamlessly combines SLAM-based localization, deep-learning-based object detection and tracking, and ontology-driven reasoning to enable real-time, semantically coherent mapping.
Ontology Enabled Hybrid Modeling and Simulation
We explore the role of ontologies in enhancing hybrid modeling and simulation through improved semantic rigor, model reusability, and interoperability across systems, disciplines, and tools. By distinguishing between methodological and referential ontologies, we demonstrate how these complementary approaches address interoperability challenges along three axes: Human-Human, Human-Machine, and Machine-Machine. Techniques such as competency questions, ontology design patterns, and layered strategies are highlighted for promoting shared understanding and formal precision. Integrating ontologies with Semantic Web Technologies, we showcase their dual role as descriptive domain representations and prescriptive guides for simulation construction. Four application cases - sea-level rise analysis, Industry 4.0 modeling, artificial societies for policy support, and cyber threat evaluation - illustrate the practical benefits of ontology-driven hybrid simulation workflows. We conclude by discussing challenges and opportunities in ontology-based hybrid M&S, including tool integration, semantic alignment, and support for explainable AI.
T-TExTS (Teaching Text Expansion for Teacher Scaffolding): Enhancing Text Selection in High School Literature through Knowledge Graph-Based Recommendation
Gelal, Nirmal, Snow, Chloe, Rios, Ambyr, McGinty, Hande Küçük
The implementation of transformational pedagogy in secondary education classrooms requires a broad multiliteracy approach. Due to limited planning time and resources, high school English Literature teachers often struggle to curate diverse, thematically aligned literature text sets. This study addresses the critical need for a tool that provides scaffolds for novice educators in selecting literature texts that are diverse -- in terms of genre, theme, subtheme, and author -- yet similar in context and pedagogical merits. We have developed a recommendation system, Teaching Text Expansion for Teacher Scaffolding (T-TExTS), that suggests high school English Literature books based on pedagogical merits, genre, and thematic relevance using a knowledge graph. We constructed a domain-specific ontology using the KNowledge Acquisition and Representation Methodology (KNARM), transformed into a knowledge graph, which was then embedded using DeepWalk, biased random walk, and a hybrid of both approaches. The system was evaluated using link prediction and recommendation performance metrics, including Area Under the Curve (AUC), Mean Reciprocal Rank (MRR), Hits@K, and normalized Discounted Cumulative Gain (nDCG). DeepWalk outperformed in most ranking metrics, with the highest AUC (0.9431), whereas the hybrid model offered balanced performance. These findings demonstrate the importance of semantic, ontology-driven approaches in recommendation systems and suggest that T-TExTS can significantly ease the burden of English Literature text selection for high school educators, promoting more informed and inclusive curricular decisions. The source code for T-TExTS is available at: https://github.com/koncordantlab/TTExTS
Enhancing Omics Cohort Discovery for Research on Neurodegeneration through Ontology-Augmented Embedding Models
Pardo, José A., Gómez-Pascual, Alicia, Palma, José T., Botía, Juan A.
The growing volume of omics and clinical data generated for neurodegenerative diseases (NDs) requires new approaches for their curation so they can be ready-to-use in bioinformatics. NeuroEmbed is an approach for the engineering of semantically accurate embedding spaces to represent cohorts and samples. The NeuroEmbed method comprises four stages: (1) extraction of ND cohorts from public repositories; (2) semi-automated normalization and augmentation of metadata of cohorts and samples using biomedical ontologies and clustering on the embedding space; (3) automated generation of a natural language question-answering (QA) dataset for cohorts and samples based on randomized combinations of standardized metadata dimensions and (4) fine-tuning of a domain-specific embedder to optimize queries. We illustrate the approach using the GEO repository and the PubMedBERT pretrained embedder. Applying NeuroEmbed, we semantically indexed 2,801 repositories and 150,924 samples. Amongst many biology-relevant categories, we normalized more than 1,700 heterogeneous tissue labels from GEO into 326 unique ontology-aligned concepts and enriched annotations with new ontology-aligned terms, leading to a fold increase in size for the metadata terms between 2.7 and 20 fold. After fine-tuning PubMedBERT with the QA training data augmented with the enlarged metadata, the model increased its mean Retrieval Precision from 0.277 to 0.866 and its mean Percentile Rank from 0.355 to 0.896. The NeuroEmbed methodology for the creation of electronic catalogues of omics cohorts and samples will foster automated bioinformatic pipelines construction.
Agent Semantics, Semantic Spacetime, and Graphical Reasoning
Semantic Spacetime (SST) is a discrete, graph theoretic'agent' representation of configurations and process phenomena, used for modelling scenarios that include knowledge representations, in the form of labelled directed graphs [1-4]. It enables both qualitative and quantitative interpretations of processes by combining physical and virtual concepts (from physics and information science) into a Promise Theoretic agent model [5]. Promise Theory principles emphasize the autonomy or locality of causal behaviour, so there are clear motivations for modelling phenomena in this way. As a graph theoretical structure, a Semantic Spacetime is a collection of nodes (agents) joined by links (channels for process information), both of which may have annotations and numerical values associated with them. A key application for Semantic Spacetime in artificial systems is to represent'knowledge' (in its simplified sense) and process structures, such as those normally associated with indexing methods or Semantic Webs, like the triple store approaches of the Resource Description Framework (RDF) [6].
Enhancing multimodal analogical reasoning with Logic Augmented Generation
Lippolis, Anna Sofia, Nuzzolese, Andrea Giovanni, Gangemi, Aldo
Recent advances in Large Language Models have demonstrated their capabilities across a variety of tasks. However, automatically extracting implicit knowledge from natural language remains a significant challenge, as machines lack active experience with the physical world. Given this scenario, semantic knowledge graphs can serve as conceptual spaces that guide the automated text generation reasoning process to achieve more efficient and explainable results. In this paper, we apply a logic-augmented generation (LAG) framework that leverages the explicit representation of a text through a semantic knowledge graph and applies it in combination with prompt heuristics to elicit implicit analogical connections. This method generates extended knowledge graph triples representing implicit meaning, enabling systems to reason on unlabeled multimodal data regardless of the domain. We validate our work through three metaphor detection and understanding tasks across four datasets, as they require deep analogical reasoning capabilities. The results show that this integrated approach surpasses current baselines, performs better than humans in understanding visual metaphors, and enables more explainable reasoning processes, though still has inherent limitations in metaphor understanding, especially for domain-specific metaphors. Furthermore, we propose a thorough error analysis, discussing issues with metaphorical annotations and current evaluation methods.