The World Wide Web Consortium (W3C) has published several recommendations for building and storing ontologies, including the most recent OWL 2 Web Ontology Language (OWL). These initiatives have been followed by practical implementations that popularize OWL in various domains. For example, OWL has been used for conceptual modeling in industrial engineering, and its reasoning facilities are used to provide a wealth of services, e.g. model diagnosis, automated code generation, and semantic integration. More specifically, recent studies have shown that OWL is well suited for harmonizing information of engineering tools stored as AutomationML (AML) files. However, OWL and its tools can be cumbersome for direct use by engineers such that an ontology expert is often required in practice. Although much attention has been paid in the literature to overcome this issue by transforming OWL ontologies from/to AML models automatically, dealing with OWL complex classes remains an open research question. In this paper, we introduce the AML concept models for representing OWL complex classes in AutomationML, and present algorithms for the bidirectional translation between OWL complex classes and their corresponding AML concept models. We show that this approach provides an efficient and intuitive interface for nonexperts to visualize, modify, and create OWL complex classes.

Ontology-based data access (OBDA) is a popular paradigm for querying heterogeneous data sources by connecting them through mappings to an ontology. In OBDA, it is often difficult to reconstruct why a tuple occurs in the answer of a query. We address this challenge by enriching OBDA with provenance semirings, taking inspiration from database theory. In particular, we investigate the problems of (i) deciding whether a provenance annotated OBDA instance entails a provenance annotated conjunctive query, and (ii) computing a polynomial representing the provenance of a query entailed by a provenance annotated OBDA instance. Differently from pure databases, in our case these polynomials may be infinite. To regain finiteness, we consider idempotent semirings, and study the complexity in the case of DL-Lite ontologies. We implement Task (ii) in a state-of-the-art OBDA system and show the practical feasibility of the approach through an extensive evaluation against two popular benchmarks.

This paper introduces the Contextual Evaluation Model (CEM), a novel method for knowledge representation and manipulation. The CEM differs from existing models in that it integrates facts, patterns and sequences into a single contextual framework. V5, an implementation of the model is presented and demonstrated with multiple annotated examples. The paper includes simulations demonstrating how the model reacts to pleasure/pain stimuli. The 'thought' is defined within the model and examples are given converting thoughts to language, converting language to thoughts and how 'meaning' arises from thoughts. A pattern learning algorithm is described. The algorithm is applied to multiple problems ranging from recognizing a voice to the autonomous learning of a simplified natural language.

Transfer learning aims at building robust prediction models by transferring knowledge gained from one problem to another. In the semantic Web, learning tasks are enhanced with semantic representations. We exploit their semantics to augment transfer learning by dealing with when to transfer with semantic measurements and what to transfer with semantic embeddings. We further present a general framework that integrates the above measurements and embeddings with existing transfer learning algorithms for higher performance. It has demonstrated to be robust in two real-world applications: bus delay forecasting and air quality forecasting.

Commonsense knowledge about object properties, human behavior and general concepts is crucial for robust AI applications. However, automatic acquisition of this knowledge is challenging because of sparseness and bias in online sources. This paper presents Quasimodo, a methodology and tool suite for distilling commonsense properties from non-standard web sources. We devise novel ways of tapping into search-engine query logs and QA forums, and combining the resulting candidate assertions with statistical cues from encyclopedias, books and image tags in a corroboration step. Unlike prior work on commonsense knowledge bases, Quasimodo focuses on salient properties that are typically associated with certain objects or concepts. Extensive evaluations, including extrinsic use-case studies, show that Quasimodo provides better coverage than state-of-the-art baselines with comparable quality.

We investigate the data complexity of answering queries mediated by metric temporal logic ontologies under the event-based semantics assuming that data instances are finite timed words timestamped with binary fractions. We identify classes of ontology-mediated queries answering which can be done in AC0, NC1, L, NL, P, and coNP for data complexity, provide their rewritings to first-order logic and its extensions with primitive recursion, transitive closure or datalog, and establish lower complexity bounds.

We propose a set of compositional design patterns to describe a large variety of systems that combine statistical techniques from machine learning with symbolic techniques from knowledge representation. As in other areas of computer science (knowledge engineering, software engineering, ontology engineering, process mining and others), such design patterns help to systematize the literature, clarify which combinations of techniques serve which purposes, and encourage re-use of software components. We have validated our set of compositional design patterns against a large body of recent literature.

Massively multi-label prediction/classification problems arise in environments like health-care or biology where very precise predictions are useful. One challenge with massively multi-label problems is that there is often a long-tailed frequency distribution for the labels, which results in few positive examples for the rare labels. We propose a solution to this problem by modifying the output layer of a neural network to create a Bayesian network of sigmoids which takes advantage of ontology relationships between the labels to help share information between the rare and the more common labels. We apply this method to the two massively multi-label tasks of disease prediction (ICD-9 codes) and protein function prediction (Gene Ontology terms) and obtain significant improvements in per-label AUROC and average precision for less common labels.

Graphs arise naturally in many real-world applications including social networks, recommender systems, ontologies, biology, and computational finance. Traditionally, machine learning models for graphs have been mostly designed for static graphs. However, many applications involve evolving graphs. This introduces important challenges for learning and inference since nodes, attributes, and edges change over time. In this survey, we review the recent advances in representation learning for dynamic graphs, including dynamic knowledge graphs. We describe existing models from an encoder-decoder perspective, categorize these encoders and decoders based on the techniques they employ, and analyze the approaches in each category. We also review several prominent applications and widely used datasets, and highlight directions for future research.

Background: Automatic recognition of medical concepts in unstructured text is an important component of many clinical and research applications, and its accuracy has a large impact on electronic health record analysis. The mining of medical concepts is complicated by the broad use of synonyms and nonstandard terms in medical documents. Objective: We present a machine learning model for concept recognition in large unstructured text, which optimizes the use of ontological structures and can identify previously unobserved synonyms for concepts in the ontology. Methods: We present a neural dictionary model that can be used to predict if a phrase is synonymous to a concept in a reference ontology. Our model, called the Neural Concept Recognizer (NCR), uses a convolutional neural network to encode input phrases and then rank medical concepts based on the similarity in that space.