Ontologies
An ontology-based chatbot for crises management: use case coronavirus
Today is the era of intelligence in machines. With the advances in Artificial Intelligence, machines have started to impersonate different human traits, a chatbot is the next big thing in the domain of conversational services. A chatbot is a virtual person who is capable to carry out a natural conversation with people. They can include skills that enable them to converse with the humans in audio, visual, or textual formats. Artificial intelligence conversational entities, also called chatbots, conversational agents, or dialogue system, are an excellent example of such machines. Obtaining the right information at the right time and place is the key to effective disaster management. The term "disaster management" encompasses both natural and human-caused disasters. To assist citizens, our project is to create a COVID Assistant to provide the need of up to date information to be available 24 hours. With the growth in the World Wide Web, it is quite intelligible that users are interested in the swift and relatedly correct information for their hunt. A chatbot can be seen as a question-and-answer system in which experts provide knowledge to solicit users. This master thesis is dedicated to discuss COVID Assistant chatbot and explain each component in detail. The design of the proposed chatbot is introduced by its seven components: Ontology, Web Scraping module, DB, State Machine, keyword Extractor, Trained chatbot, and User Interface.
Advanced Semantics for Commonsense Knowledge Extraction
Nguyen, Tuan-Phong, Razniewski, Simon, Weikum, Gerhard
Commonsense knowledge (CSK) about concepts and their properties is useful for AI applications such as robust chatbots. Prior works like ConceptNet, TupleKB and others compiled large CSK collections, but are restricted in their expressiveness to subject-predicate-object (SPO) triples with simple concepts for S and monolithic strings for P and O. Also, these projects have either prioritized precision or recall, but hardly reconcile these complementary goals. This paper presents a methodology, called Ascent, to automatically build a large-scale knowledge base (KB) of CSK assertions, with advanced expressiveness and both better precision and recall than prior works. Ascent goes beyond triples by capturing composite concepts with subgroups and aspects, and by refining assertions with semantic facets. The latter are important to express temporal and spatial validity of assertions and further qualifiers. Ascent combines open information extraction with judicious cleaning using language models. Intrinsic evaluation shows the superior size and quality of the Ascent KB, and an extrinsic evaluation for QA-support tasks underlines the benefits of Ascent.
Generating Knowledge Graphs by Employing Natural Language Processing and Machine Learning Techniques within the Scholarly Domain
Dessรฌ, Danilo, Osborne, Francesco, Recupero, Diego Reforgiato, Buscaldi, Davide, Motta, Enrico
The continuous growth of scientific literature brings innovations and, at the same time, raises new challenges. One of them is related to the fact that its analysis has become difficult due to the high volume of published papers for which manual effort for annotations and management is required. Novel technological infrastructures are needed to help researchers, research policy makers, and companies to time-efficiently browse, analyse, and forecast scientific research. Knowledge graphs i.e., large networks of entities and relationships, have proved to be effective solution in this space. Scientific knowledge graphs focus on the scholarly domain and typically contain metadata describing research publications such as authors, venues, organizations, research topics, and citations. However, the current generation of knowledge graphs lacks of an explicit representation of the knowledge presented in the research papers. As such, in this paper, we present a new architecture that takes advantage of Natural Language Processing and Machine Learning methods for extracting entities and relationships from research publications and integrates them in a large-scale knowledge graph. Within this research work, we i) tackle the challenge of knowledge extraction by employing several state-of-the-art Natural Language Processing and Text Mining tools, ii) describe an approach for integrating entities and relationships generated by these tools, iii) show the advantage of such an hybrid system over alternative approaches, and vi) as a chosen use case, we generated a scientific knowledge graph including 109,105 triples, extracted from 26,827 abstracts of papers within the Semantic Web domain. As our approach is general and can be applied to any domain, we expect that it can facilitate the management, analysis, dissemination, and processing of scientific knowledge.
How Elsevier Accelerated COVID-19 research using Dask on Saturn Cloud -- Elsevier Labs
The version of CORD-19 that we used yielded 3,389,064 paragraphs and 16,952,279 sentences. Each sentence is sent to each model and yields zero or more entities. A notable point is that the process of generating entities from sentences is embarrassingly parallel, and therefore processing multiple sentences in parallel achieves savings in processing time. . To process the dataset, we used Dask, an open source library for parallel computing in Python. Dask provides multiple convenient abstractions that mimic familiar APIs such as Numpy and Pandas Dataframes, which can operate on datasets that do not fit in main memory.
Multifaceted Context Representation using Dual Attention for Ontology Alignment
Iyer, Vivek, Agarwal, Arvind, Kumar, Harshit
Ontology Alignment is an important research problem that finds application in various fields such as data integration, data transfer, data preparation etc. State-of-the-art (SOTA) architectures in Ontology Alignment typically use naive domain-dependent approaches with handcrafted rules and manually assigned values, making them unscalable and inefficient. Deep Learning approaches for ontology alignment use domain-specific architectures that are not only in-extensible to other datasets and domains, but also typically perform worse than rule-based approaches due to various limitations including over-fitting of models, sparsity of datasets etc. In this work, we propose VeeAlign, a Deep Learning based model that uses a dual-attention mechanism to compute the contextualized representation of a concept in order to learn alignments. By doing so, not only does our approach exploit both syntactic and semantic structure of ontologies, it is also, by design, flexible and scalable to different domains with minimal effort. We validate our approach on various datasets from different domains and in multilingual settings, and show its superior performance over SOTA methods.
From Conjunctive Queries to Instance Queries in Ontology-Mediated Querying
Feier, Cristina, Lutz, Carsten, Wolter, Frank
We consider ontology-mediated queries (OMQs) based on expressive description logics of the ALC family and (unions) of conjunctive queries, studying the rewritability into OMQs based on instance queries (IQs). Our results include exact characterizations of when such a rewriting is possible and tight complexity bounds for deciding rewritability. We also give a tight complexity bound for the related problem of deciding whether a given MMSNP sentence is equivalent to a CSP.
Self-alignment Pre-training for Biomedical Entity Representations
Liu, Fangyu, Shareghi, Ehsan, Meng, Zaiqiao, Basaldella, Marco, Collier, Nigel
Despite the widespread success of self-supervised learning via masked language models, learning representations directly from text to accurately capture complex and fine-grained semantic relationships in the biomedical domain remains as a challenge. Addressing this is of paramount importance for tasks such as entity linking where complex relational knowledge is pivotal. We propose SapBERT, a pre-training scheme based on BERT. It self-aligns the representation space of biomedical entities with a metric learning objective function leveraging UMLS, a collection of biomedical ontologies with >4M concepts. Our experimental results on six medical entity linking benchmarking datasets demonstrate that SapBERT outperforms many domain-specific BERT-based variants such as BioBERT, BlueBERT and PubMedBERT, achieving the state-of-the-art (SOTA) performances.
Exploring Sequence-to-Sequence Models for SPARQL Pattern Composition
Panchbhai, Anand, Soru, Tommaso, Marx, Edgard
A booming amount of information is continuously added to the Internet as structured and unstructured data, feeding knowledge bases such as DBpedia and Wikidata with billions of statements describing millions of entities. The aim of Question Answering systems is to allow lay users to access such data using natural language without needing to write formal queries. However, users often submit questions that are complex and require a certain level of abstraction and reasoning to decompose them into basic graph patterns. In this short paper, we explore the use of architectures based on Neural Machine Translation called Neural SPARQL Machines to learn pattern compositions. We show that sequence-to-sequence models are a viable and promising option to transform long utterances into complex SPARQL queries.
Pinaki Laskar posted on LinkedIn
AI collects, processes and generates coded "representations", #data, numbers, symbols or signals, as programmable #cognitive functions, sensation, perception, learning, reasoning, self-knowing, understanding, decision making and acting. Coding is inputting a collection of data as instructions into a programming language to convert into low level instructions that machines understand, as #machine language/code. Algorithms as automated data instructions can be simple or complex, depending on how many layers deep the initial algorithm goes. It is rather data models, schemata or global ontology with the mental models of reality, world views, common sense knowledge, science, domain ontologies, theories of mind, etc. what makes all the difference. Artificial Intelligence is an informational entity, a composite of information and information processing by advanced software that can self-learn and self-improve and self-code.
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus
Michalopoulos, George, Wang, Yuanxin, Kaka, Hussam, Chen, Helen, Wong, Alex
Contextual word embedding models, such as BioBERT and Bio_ClinicalBERT, have achieved state-of-the-art results in biomedical natural language processing tasks by focusing their pre-training process on domain-specific corpora. However, such models do not take into consideration expert domain knowledge. In this work, we introduced UmlsBERT, a contextual embedding model that integrates domain knowledge during the pre-training process via a novel knowledge augmentation strategy. More specifically, the augmentation on UmlsBERT with the Unified Medical Language System (UMLS) Metathesaurus was performed in two ways: i) connecting words that have the same underlying `concept' in UMLS, and ii) leveraging semantic group knowledge in UMLS to create clinically meaningful input embeddings. By applying these two strategies, UmlsBERT can encode clinical domain knowledge into word embeddings and outperform existing domain-specific models on common named-entity recognition (NER) and clinical natural language inference clinical NLP tasks.