Ontology alignment (a.k.a ontology matching (OM)) plays a critical role in knowledge integration. Owing to the success of machine learning in many domains, it has been applied in OM. However, the existing methods, which often adopt ad-hoc feature engineering or non-contextual word embeddings, have not yet outperformed rule-based systems especially in an unsupervised setting. In this paper, we propose a novel OM system named BERTMap which can support both unsupervised and semi-supervised settings. It first predicts mappings using a classifier based on fine-tuning the contextual embedding model BERT on text semantics corpora extracted from ontologies, and then refines the mappings through extension and repair by utilizing the ontology structure and logic. Our evaluation with three alignment tasks on biomedical ontologies demonstrates that BERTMap can often perform better than the leading OM systems LogMap and AML.

In constraint languages for RDF graphs, such as ShEx and SHACL, constraints on nodes and their properties in RDF graphs are known as "shapes". Schemas in these languages list the various shapes that certain targeted nodes must satisfy for the graph to conform to the schema. Using SHACL, we propose in this paper a novel use of shapes, by which a set of shapes is used to extract a subgraph from an RDF graph, the so-called shape fragment. Our proposed mechanism fits in the framework of Linked Data Fragments. In this paper, (i) we define our extraction mechanism formally, building on recently proposed SHACL formalizations; (ii) we establish correctness properties, which relate shape fragments to notions of provenance for database queries; (iii) we compare shape fragments with SPARQL queries; (iv) we discuss implementation options; and (v) we present initial experiments demonstrating that shape fragments are a feasible new idea.

In order to provide the agricultural industry with the infrastructure it needs to take advantage of advanced technology, such as big data, the cloud, and the internet of things (IoT); smart farming is a management concept that focuses on providing the infrastructure necessary to track, monitor, automate, and analyse operations. To represent the knowledge extracted from the primary data collected is of utmost importance. An agricultural ontology framework for smart agriculture systems is presented in this study. The knowledge graph is represented as a lattice to capture and perform reasoning on spatio-temporal agricultural data.

Existential rule languages are a family of ontology languages that have been widely used in ontology-mediated query answering (OMQA). However, for most of them, the expressive power of representing domain knowledge for OMQA, known as the program expressive power, is not well-understood yet. In this paper, we establish a number of novel characterizations for the program expressive power of several important existential rule languages, including tuple-generating dependencies (TGDs), linear TGDs, as well as disjunctive TGDs. The characterizations employ natural model-theoretic properties, and automata-theoretic properties sometimes, which thus provide powerful tools for identifying the definability of domain knowledge for OMQA in these languages.

Few-shot classification tasks aim to classify images in query sets based on only a few labeled examples in support sets. Most studies usually assume that each image in a task has a single and unique class association. Under these assumptions, these algorithms may not be able to identify the proper class assignment when there is no exact matching between support and query classes. For example, given a few images of lions, bikes, and apples to classify a tiger. However, in a more general setting, we could consider the higher-level concept of large carnivores to match the tiger to the lion for semantic classification. Existing studies rarely considered this situation due to the incompatibility of label-based supervision with complex conception relationships. In this work, we advanced the few-shot learning towards this more challenging scenario, the semantic-based few-shot learning, and proposed a method to address the paradigm by capturing the inner semantic relationships using interactive psychometric learning. We evaluate our method on the CIFAR-100 dataset. The results show the merits of our proposed method.

Despite encoding enormous amount of rich and valuable data, existing data sources are mostly created independently, being a significant challenge to their integration. Mapping languages, e.g., RML and R2RML, facilitate declarative specification of the process of applying meta-data and integrating data into a knowledge graph. Mapping rules can also include knowledge extraction functions in addition to expressing correspondences among data sources and a unified schema. Combining mapping rules and functions represents a powerful formalism to specify pipelines for integrating data into a knowledge graph transparently. Surprisingly, these formalisms are not fully adapted, and many knowledge graphs are created by executing ad-hoc programs to pre-process and integrate data. In this paper, we present EABlock, an approach integrating Entity Alignment (EA) as part of RML mapping rules. EABlock includes a block of functions performing entity recognition from textual attributes and link the recognized entities to the corresponding resources in Wikidata, DBpedia, and domain specific thesaurus, e.g., UMLS. EABlock provides agnostic and efficient techniques to evaluate the functions and transfer the mappings to facilitate its application in any RML-compliant engine. We have empirically evaluated EABlock performance, and results indicate that EABlock speeds up knowledge graph creation pipelines that require entity recognition and linking in state-of-the-art RML-compliant engines. EABlock is also publicly available as a tool through a GitHub repository(https://github.com/SDM-TIB/EABlock) and a DOI(https://doi.org/10.5281/zenodo.5779773).

Mining medical concepts from written clinical text, such as patient encounters, plays an important role in clinical analytics and decision-making applications, such as population analytics for providers, pre-authorization for payers, and adverse-event detection for pharma companies. Medical concepts contain medical conditions, medications, procedures, and other clinical events. Extracting medical concepts is a complicated process due to the specialist knowledge required and the broad use of synonyms in the medical field. Furthermore, to make detected concepts useful for large-scale analytics and decision-making applications, they have to be codified. This is a process where a specialist looks up matching codes from a medical ontology, often containing tens to hundreds of thousands of concepts.

In this paper, we discuss Semantic Construction Grammar (SCG), a system developed over the past several years to facilitate translation between natural language and logical representations. Crucially, SCG is designed to support a variety of different methods of representation, ranging from those that are fairly close to the NL structure (e.g. so-called 'logical forms'), to those that are quite different from the NL structure, with higher-order and high-arity relations. Semantic constraints and checks on representations are integral to the process of NL understanding with SCG, and are easily carried out due to the SCG's integration with Cyc's Knowledge Base and inference engine.

Wikidata is the largest general-interest knowledge base that is openly available. It is collaboratively edited by thousands of volunteer editors and has thus evolved considerably since its inception in 2012. In this paper, we present Wikidated 1.0, a dataset of Wikidata's full revision history, which encodes changes between Wikidata revisions as sets of deletions and additions of RDF triples. To the best of our knowledge, it constitutes the first large dataset of an evolving knowledge graph, a recently emerging research subject in the Semantic Web community. We introduce the methodology for generating Wikidated 1.0 from dumps of Wikidata, discuss its implementation and limitations, and present statistical characteristics of the dataset.

This works considers challenges of building and usage a formal knowledge base (model), which unites the ATT&CK, CAPEC, CWE, CVE security enumerations. The proposed model can be used to learn relations between attack techniques, attack pattern, weaknesses, and vulnerabilities in order to build various threat landscapes, in particular, for threat modeling. The model is created as an ontology with freely available datasets in the OWL and RDF formats. The use of ontologies is an alternative of structural and graph based approaches to integrate the security enumerations. In this work we consider an approach of threat modeling with the data components of ATT&CK based on the knowledge base and an ontology driven threat modeling framework. Also, some evaluations are made, how it can be possible to use the ontological approach of threat modeling and which challenges this can be faced.