Building an ontology is not only a time-consuming process, but it is also confusing, especially for beginners and the inexperienced. Although ontology developers can take the help of domain experts in building an ontology, they are not readily available in several cases for a variety of reasons. Ontology developers have to grapple with several questions related to the choice of classes, properties, and the axioms that should be included. Apart from this, there are aspects such as modularity and reusability that should be taken care of. From among the thousands of publicly available ontologies and vocabularies in repositories such as Linked Open Vocabularies (LOV) and BioPortal, it is hard to know the terms (classes and properties) that can be reused in the development of an ontology. A similar problem exists in implementing the right set of ontology design patterns (ODPs) from among the several available. Generally, ontology developers make use of their experience in handling these issues, and the inexperienced ones have a hard time. In order to bridge this gap, we propose a tool named OntoSeer, that monitors the ontology development process and provides suggestions in real-time to improve the quality of the ontology under development. It can provide suggestions on the naming conventions to follow, vocabulary to reuse, ODPs to implement, and axioms to be added to the ontology. OntoSeer has been implemented as a Prot\'eg\'e plug-in.

Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies on a knowledge graph in combination with natural language processing (NLP), information retrieval, relevance feedback, and network analysis. Knowledge mapping reduces information overload, prevents costly mistakes, and minimizes missed opportunities in the research process. The platform combines state-of-the-art methods for information extraction with machine learning, artificial intelligence and network analysis. Starting from a single biological entity, such as a gene or disease, users may: a) construct a map of connections to that entity, b) map an entire domain of interest, and c) gain insight into large biological networks of knowledge. Knowledge maps provide clarity and organization, simplifying the day-to-day research processes.

Few-shot Learning (FSL) is aimed to make predictions based on a limited number of samples. Structured data such as knowledge graphs and ontology libraries has been leveraged to benefit the few-shot setting in various tasks. However, the priors adopted by the existing methods suffer from challenging knowledge missing, knowledge noise, and knowledge heterogeneity, which hinder the performance for few-shot learning. In this study, we explore knowledge injection for FSL with pre-trained language models and propose ontology-enhanced prompt-tuning (OntoPrompt). Specifically, we develop the ontology transformation based on the external knowledge graph to address the knowledge missing issue, which fulfills and converts structure knowledge to text. We further introduce span-sensitive knowledge injection via a visible matrix to select informative knowledge to handle the knowledge noise issue. To bridge the gap between knowledge and text, we propose a collective training algorithm to optimize representations jointly. We evaluate our proposed OntoPrompt in three tasks, including relation extraction, event extraction, and knowledge graph completion, with eight datasets. Experimental results demonstrate that our approach can obtain better few-shot performance than baselines.

Recently, various methods for representation learning on Knowledge Bases (KBs) have been developed. However, these approaches either only focus on learning the embeddings of the data-level knowledge (ABox) or exhibit inherent limitations when dealing with the concept-level knowledge (TBox), e.g., not properly modelling the structure of the logical knowledge. We present BoxEL, a geometric KB embedding approach that allows for better capturing logical structure expressed in the theories of Description Logic EL++. BoxEL models concepts in a KB as axis-parallel boxes exhibiting the advantage of intersectional closure, entities as points inside boxes, and relations between concepts/entities as affine transformations. We show theoretical guarantees (soundness) of BoxEL for preserving logical structure. Namely, the trained model of BoxEL embedding with loss 0 is a (logical) model of the KB. Experimental results on subsumption reasoning and a real-world application--protein-protein prediction show that BoxEL outperforms traditional knowledge graph embedding methods as well as state-of-the-art EL++ embedding approaches.

RDF knowledge graphs (KG) are powerful data structures to represent factual statements created from heterogeneous data sources. KG creation is laborious, and demands data management techniques to be executed efficiently. This paper tackles the problem of the automatic generation of KG creation processes declaratively specified; it proposes techniques for planning and transforming heterogeneous data into RDF triples following mapping assertions specified in the RDF Mapping Language (RML). Given a set of mapping assertions, the planner provides an optimized execution plan by partitioning and scheduling the execution of the assertions. First, the planner assesses an optimized number of partitions considering the number of data sources, type of mapping assertions, and the associations between different assertions. After providing a list of partitions and assertions that belong to each partition, the planner determines their execution order. A greedy algorithm is implemented to generate the partitions' bushy tree execution plan. Bushy tree plans are translated into operating system commands that guide the execution of the partitions of the mapping assertions in the order indicated by the bushy tree. The proposed optimization approach is evaluated over state-of-the-art RML-compliant engines and existing benchmarks of data sources and RML triples maps. Our experimental results suggest that the performance of the studied engines can be considerably improved, particularly in a complex setting with numerous triples maps and data sources. As a result, engines that usually time in complex cases out can, if not entirely execute all the assertions, still produce a portion of the KG.

In the abundance of information, both machines and human researchers need tools to navigate and process it. Structuring and formalization of data into hierarchies, such as trees, may establish the relations between the data required for efficient machine processing and may make the information more readable for data analysts. Yet, in more complex domains, such as in natural language processing, relations between concepts go beyond simple hierarchies and form thesaurus-like networks. For such cases, researchers use ontologies as common vocabularies for specialists who need to share information in a domain. Ontologies were first defined as "explicit formal specifications of the terms in the domain and relations among them" (Gruber 1993) and, more specifically, "a formal, explicit specification of a shared conceptualization" (Studer et al. 1998) and are used in a number of applications, including the following, as specified by Noy and McGuinness (Noy and McGuinness 2001): Ontologies are the tools to provide comprehensive description of the domain of interest with respect to the users' needs It is something that we see when, for example, medical information is published on, several different websites.

Business process (BP) analysis represents a first key phase of information system development. It consists in the gathering of domain knowledge and its organization to be later used in the software development, and beyond (e.g., for Business Process Reengineering). The quality of the developed information system largely depends on how the BP analysis has been carried out and the quality of the produced requirement specification documents. Despite the fact that the issue is on the table for decades, business process analysis is still a critical phase of information systems development. One promising strategy is an early and more important involvement of business experts in the BP analysis. This paper presents a methodology that aims at an early involvement of business experts while providing a formal grounding that guarantees the quality of the produced specifications. To this end, we propose the Business Process Analysis Canvas, a knowledge framework organized in eight knowledge sections aimed at supporting the business expert in carrying out the analysis, eventually yielding a BP analysis Ontology.

Ontologies have been known for their semantic representation of knowledge. ontologies cannot automatically evolve to reflect updates that occur in respective domains. To address this limitation, researchers have called for automatic ontology generation from unstructured text corpus. Unfortunately, systems that aim to generate ontologies from unstructured text corpus are domain-specific and require manual intervention. In addition, they suffer from uncertainty in creating concept linkages and difficulty in finding axioms for the same concept. Knowledge Graphs (KGs) has emerged as a powerful model for the dynamic representation of knowledge. However, KGs have many quality limitations and need extensive refinement. This research aims to develop a novel domain-independent automatic ontology generation framework that converts unstructured text corpus into domain consistent ontological form. The framework generates KGs from unstructured text corpus as well as refine and correct them to be consistent with domain ontologies. The power of the proposed automatically generated ontology is that it integrates the dynamic features of KGs and the quality features of ontologies.

This paper introduces a formal definition of a Cyber-Physical System (CPS) in the spirit of the CPS Framework proposed by the National Institute of Standards and Technology (NIST). It shows that using this definition, various problems related to concerns in a CPS can be precisely formalized and implemented using Answer Set Programming (ASP). These include problems related to the dependency or conflicts between concerns, how to mitigate an issue, and what the most suitable mitigation strategy for a given issue would be. It then shows how ASP can be used to develop an implementation that addresses the aforementioned problems. The paper concludes with a discussion of the potentials of the proposed methodologies.

It is commonly acknowledged that the availability of the huge amount of (training) data is one of the most important factors for many recent advances in Artificial Intelligence (AI). However, datasets are often designed for specific tasks in narrow AI sub areas and there is no unified way to manage and access them. This not only creates unnecessary overheads when training or deploying Machine Learning models but also limits the understanding of the data, which is very important for data-centric AI. In this paper, we present our vision about a unified framework for different datasets so that they can be integrated and queried easily, e.g., using standard query languages. We demonstrate this in our ongoing work to create a framework for datasets in Computer Vision and show its advantages in different scenarios.