Ontologies
Sleeman
We describe an approach to reducing the computational cost of identifying coreferent instances in heterogeneous semantic graphs where the underlying ontologies may not be informative or even known. The problem is similar to coreference resolution in unstructured text, where a variety of linguistic clues and contextual information is used to infer entity types and predict coreference. Semantic graphs, whether in RDF or another formalism, are semi-structured data with very different contextual clues and need different approaches to identify potentially coreferent entities. When their ontologies are unknown, inaccessible or semantically trivial, coreference resolution is difficult. For such cases, we can use supervised machine learning to map entity attributes via dictionaries based on properties from an appropriate background knowledge base to predict instance entity types, aiding coreference resolution. We evaluated the approach in experiments on data from Wikipedia, Freebase and Arnetminer and DBpedia as the background knowledge base.
Beek
The success of the Web of Data (WOD) is based on the thorough understanding of, and agreement upon, the se- mantics of data and ontologies. But the Web of Data as a whole is complex, and inherently messy, contex- tualised, opinionated, in short: it is a market-place of ideas, rather than a database. Existing paradigms are in- appropriate for dealing with this new type of knowledge structures. The urgency of dealing with the non-standard charac- teristics of the Web of Data has been recognised, and separate initiatives try to tackle its individual manifes- tations, e.g.
Scherl
When the amount of RDF data is very large, it becomes more likely that the triples describing entities will contain errors and may not include the specification of a class from a known ontology. The work presented here explores the utilization of methods from machine learning to develop classifiers for identifying the semantic categorization of entities based upon the property names used to describe the entity. The goal is to develop classifiers that are accurate, but robust to errors and noise. The training data comes from DBpedia, where entities are categorized by type and densely described with RDF properties. The initial experimentation reported here indicates that the approach is promising.
Knoblock
Much of the focus on big data has been on the problem of processing very large sources. There is an equally hard problem of how to normalize, integrate, and transform the data from many sources into the format required to run large-scale analysis and visualization tools. We have previously developed an approach to semi-automatically mapping diverse sources into a shared domain ontology so that they can be quickly combined. In this paper we describe our approach to building and executing integration and restructuring plans to support analysis and visualization tools on very large and diverse datasets.
Sander
We present an implemented approach to transform natural language sentences into SPARQL, using background knowledge from ontologies and lexicons. Therefore, eligible technologies and data storage possibilities are analyzed and evaluated. The contributions of this paper are twofold. Firstly, we describe the motivation and current needs for a natural language access to industry data. We describe several scenarios where the proposed solution is required.
Bokaei Hosseini
Privacy policies are used to communicate company data practices to consumers and must be accurate and comprehensive. Each policy author is free to use their own nomenclature when describing data practices, which leads to different ways in which similar information types are described across policies. A formal ontology can help policy authors, users and regulators consistently check how data practice descriptions relate to other interpretations of information types. In this paper, we describe an empirical method for manually constructing an information type ontology from privacy policies. The method consists of seven heuristics that explain how to infer hypernym, meronym and synonym relationships from information type phrases, which we discovered using grounded analysis of five privacy policies. The method was evaluated on 50 mobile privacy policies which produced an ontology consisting of 355 unique information type names. Based on the manual results, we describe an automated technique consisting of 14 reusable semantic rules to extract hypernymy, meronymy, and synonymy relations from information type phrases. The technique was evaluated on the manually constructed ontology to yield .95 precision and .51
Towards Loosely-Coupling Knowledge Graph Embeddings and Ontology-based Reasoning
Kaoudi, Zoi, Lorenzo, Abelardo Carlos Martinez, Markl, Volker
Knowledge graph completion (a.k.a.~link prediction), i.e.,~the task of inferring missing information from knowledge graphs, is a widely used task in many applications, such as product recommendation and question answering. The state-of-the-art approaches of knowledge graph embeddings and/or rule mining and reasoning are data-driven and, thus, solely based on the information the input knowledge graph contains. This leads to unsatisfactory prediction results which make such solutions inapplicable to crucial domains such as healthcare. To further enhance the accuracy of knowledge graph completion we propose to loosely-couple the data-driven power of knowledge graph embeddings with domain-specific reasoning stemming from experts or entailment regimes (e.g., OWL2). In this way, we not only enhance the prediction accuracy with domain knowledge that may not be included in the input knowledge graph but also allow users to plugin their own knowledge graph embedding and reasoning method. Our initial results show that we enhance the MRR accuracy of vanilla knowledge graph embeddings by up to 3x and outperform hybrid solutions that combine knowledge graph embeddings with rule mining and reasoning up to 3.5x MRR.
OntoSeer -- A Recommendation System to Improve the Quality of Ontologies
Bhattacharyya, Pramit, Mutharaju, Raghava
Building an ontology is not only a time-consuming process, but it is also confusing, especially for beginners and the inexperienced. Although ontology developers can take the help of domain experts in building an ontology, they are not readily available in several cases for a variety of reasons. Ontology developers have to grapple with several questions related to the choice of classes, properties, and the axioms that should be included. Apart from this, there are aspects such as modularity and reusability that should be taken care of. From among the thousands of publicly available ontologies and vocabularies in repositories such as Linked Open Vocabularies (LOV) and BioPortal, it is hard to know the terms (classes and properties) that can be reused in the development of an ontology. A similar problem exists in implementing the right set of ontology design patterns (ODPs) from among the several available. Generally, ontology developers make use of their experience in handling these issues, and the inexperienced ones have a hard time. In order to bridge this gap, we propose a tool named OntoSeer, that monitors the ontology development process and provides suggestions in real-time to improve the quality of the ontology under development. It can provide suggestions on the naming conventions to follow, vocabulary to reuse, ODPs to implement, and axioms to be added to the ontology. OntoSeer has been implemented as a Prot\'eg\'e plug-in.
Epistemic AI platform accelerates innovation by connecting biomedical knowledge
Koo, Emily, Bowling, Heather, Ashworth, Kenneth, Heeger, David J., Pacifico, Stefano
Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies on a knowledge graph in combination with natural language processing (NLP), information retrieval, relevance feedback, and network analysis. Knowledge mapping reduces information overload, prevents costly mistakes, and minimizes missed opportunities in the research process. The platform combines state-of-the-art methods for information extraction with machine learning, artificial intelligence and network analysis. Starting from a single biological entity, such as a gene or disease, users may: a) construct a map of connections to that entity, b) map an entire domain of interest, and c) gain insight into large biological networks of knowledge. Knowledge maps provide clarity and organization, simplifying the day-to-day research processes.
Ontology-enhanced Prompt-tuning for Few-shot Learning
Ye, Hongbin, Zhang, Ningyu, Deng, Shumin, Chen, Xiang, Chen, Hui, Xiong, Feiyu, Chen, Xi, Chen, Huajun
Few-shot Learning (FSL) is aimed to make predictions based on a limited number of samples. Structured data such as knowledge graphs and ontology libraries has been leveraged to benefit the few-shot setting in various tasks. However, the priors adopted by the existing methods suffer from challenging knowledge missing, knowledge noise, and knowledge heterogeneity, which hinder the performance for few-shot learning. In this study, we explore knowledge injection for FSL with pre-trained language models and propose ontology-enhanced prompt-tuning (OntoPrompt). Specifically, we develop the ontology transformation based on the external knowledge graph to address the knowledge missing issue, which fulfills and converts structure knowledge to text. We further introduce span-sensitive knowledge injection via a visible matrix to select informative knowledge to handle the knowledge noise issue. To bridge the gap between knowledge and text, we propose a collective training algorithm to optimize representations jointly. We evaluate our proposed OntoPrompt in three tasks, including relation extraction, event extraction, and knowledge graph completion, with eight datasets. Experimental results demonstrate that our approach can obtain better few-shot performance than baselines.