Case-Based Reasoning
TEXTAL: Crystallographic Protein Model Building Using AI and Pattern Recognition
Gopal, Kreshna, Romo, Tod D., McKee, Erik W., Pai, Reetal, Smith, Jacob N., Sacchettini, James C., Ioerger, Thomas R.
TEXTAL is a computer program that automatically interprets electron density maps to determine the atomic structures of proteins through X-ray crystallography. Electron density maps are traditionally interpreted by visually fitting atoms into density patterns. This manual process can be time-consuming and error prone, even for expert crystallographers. Noise in the data and limited resolution make map interpretation challenging. To automate the process, TEXTAL employs a variety of AI and pattern-recognition techniques that emulate the decision-making processes of domain experts. In this article, we discuss the various ways AI technology is used in TEXTAL, including neural networks, case-based reasoning, nearest neighbor learning and linear discriminant analysis. The AI and pattern-recognition approaches have proven to be effective for building protein models even with medium resolution data. TEXTAL is a successfully deployed application; it is being used in more than 100 crystallography labs from 20 countries.
The Sixth International Conference on Case-Based Reasoning (ICCBR-05)
Munoz-Avila, Hector, Ricci, Francesco, Burke, Robin
The Sixth International Conference on Case-Based Reasoning (ICCBR-05) took place from 23 August through 26 August 2005 at the downtown campus of De- Paul University, in the heart of Chicago's downtown Loop. The conference program included Industry Day, four workshops, and two days of technical paper presentations divided into poster sessions and a single plenary track. This report describes the conference in detail.
The Sixth International Conference on Case-Based Reasoning (ICCBR-05)
Munoz-Avila, Hector, Ricci, Francesco, Burke, Robin
The program committee selected the paper "Learning to Win: Case-Based Plan Selection in a Real-Time Strategy Game" by David W. Aha (Naval Research Laboratory), The second day featured reasoning research. This report describes the conference in detail. David Aha noted the need Derek Bridge, the University College to enhance the theoretical foundations Case-Based Reasoning (ICCBR) Cork, and Craig Knoblock, the of CBR. College Dublin) stressed the fact that meeting on case-based reasoning ICCBR-05 received 74 paper submissions in recent years we have focused on (CBR). Of these, the program committee needed with respect to experience highlighting the most significant selected 26 for poster presentations modeling and reuse.
An Investigation of Practical Approximate Nearest Neighbor Algorithms
Liu, Ting, Moore, Andrew W., Yang, Ke, Gray, Alexander G.
This paper concerns approximate nearest neighbor searching algorithms, which have become increasingly important, especially in high dimensional perception areas such as computer vision, with dozens of publications in recent years. Much of this enthusiasm is due to a successful new approximate nearest neighbor approach called Locality Sensitive Hashing (LSH). In this paper we ask the question: can earlier spatial data structure approaches to exact nearest neighbor, such as metric trees, be altered to provide approximate answers to proximity queries and if so, how? We introduce a new kind of metric tree that allows overlap: certain datapoints may appear in both the children of a parent. We also introduce new approximate k-NN search algorithms on this structure. We show why these structures should be able to exploit the same randomprojection-based approximations that LSH enjoys, but with a simpler algorithm and perhaps with greater efficiency. We then provide a detailed empirical evaluation on five large, high dimensional datasets which show up to 31-fold accelerations over LSH. This result holds true throughout the spectrum of approximation levels.
Instance-Based Relevance Feedback for Image Retrieval
Gia\-cin\-to, Giorgio, Roli, Fabio
High retrieval precision in content-based image retrieval can be attained by adopting relevance feedback mechanisms. These mechanisms require that the user judges the quality of the results of the query by marking all the retrieved images as being either relevant or not. Then, the search engine exploits this information to adapt the search to better meet user's needs. At present, the vast majority of proposed relevance feedback mechanisms are formulated in terms of search model that has to be optimized. Such an optimization involves the modification of some search parameters so that the nearest neighbor of the query vector contains the largest number of relevant images.
An Investigation of Practical Approximate Nearest Neighbor Algorithms
Liu, Ting, Moore, Andrew W., Yang, Ke, Gray, Alexander G.
This paper concerns approximate nearest neighbor searching algorithms, which have become increasingly important, especially in high dimensional perception areas such as computer vision, with dozens of publications in recent years. Much of this enthusiasm is due to a successful new approximate nearest neighbor approach called Locality Sensitive Hashing (LSH). In this paper we ask the question: can earlier spatial data structure approaches to exact nearest neighbor, such as metric trees, be altered to provide approximate answers to proximity queries and if so, how? We introduce a new kind of metric tree that allows overlap: certain datapoints may appear in both the children of a parent. We also introduce new approximate k-NN search algorithms on this structure. We show why these structures should be able to exploit the same randomprojection-based approximations that LSH enjoys, but with a simpler algorithm and perhaps with greater efficiency. We then provide a detailed empirical evaluation on five large, high dimensional datasets which show up to 31-fold accelerations over LSH. This result holds true throughout the spectrum of approximation levels.
Instance-Based Relevance Feedback for Image Retrieval
Gia\-cin\-to, Giorgio, Roli, Fabio
High retrieval precision in content-based image retrieval can be attained by adopting relevance feedback mechanisms. These mechanisms require that the user judges the quality of the results of the query by marking all the retrieved images as being either relevant or not. Then, the search engine exploits this information to adapt the search to better meet user's needs. At present, the vast majority of proposed relevance feedback mechanisms are formulated in terms of search model that has to be optimized. Such an optimization involves the modification of some search parameters so that the nearest neighbor of the query vector contains the largest number of relevant images.
Instance-Based Relevance Feedback for Image Retrieval
Gia\-cin\-to, Giorgio, Roli, Fabio
High retrieval precision in content-based image retrieval can be attained by adopting relevance feedback mechanisms. These mechanisms require that the user judges the quality of the results of the query by marking all the retrieved images as being either relevant or not. Then, the search engine exploits this information to adapt the search to better meet user's needs. At present, the vast majority of proposed relevance feedback mechanisms are formulated in terms of search model that has to be optimized. Such an optimization involves the modification of some search parameters so that the nearest neighbor of the query vector contains the largest number of relevant images.
An Investigation of Practical Approximate Nearest Neighbor Algorithms
Liu, Ting, Moore, Andrew W., Yang, Ke, Gray, Alexander G.
This paper concerns approximate nearest neighbor searching algorithms, which have become increasingly important, especially in high dimensional perceptionareas such as computer vision, with dozens of publications in recent years. Much of this enthusiasm is due to a successful new approximate nearest neighbor approach called Locality Sensitive Hashing (LSH).In this paper we ask the question: can earlier spatial data structure approaches to exact nearest neighbor, such as metric trees, be altered to provide approximate answers to proximity queries and if so, how? We introduce a new kind of metric tree that allows overlap: certain datapoints may appear in both the children of a parent. We also introduce newapproximate k-NN search algorithms on this structure. We show why these structures should be able to exploit the same randomprojection-based approximationsthat LSH enjoys, but with a simpler algorithm and perhaps with greater efficiency. We then provide a detailed empirical evaluation on five large, high dimensional datasets which show up to 31-fold accelerations over LSH. This result holds true throughout the spectrum of approximation levels.
Tenth Anniversary of the Plastics Color Formulation Tool
Since 1994, GE Plastics has employed a case-based reasoning (CBR) tool that determines color formulas that match requested colors. This tool, called FormTool, has saved GE millions of dollars in productivity and material (that is, colorant) costs. The technology developed in FormTool has been used to create an online color-selection tool for our customers called ColorXpress Select. A customer innovation center has been developed around the FormTool software.