We present Pre-trained Machine Reader (PMR), a novel method for retrofitting pre-trained masked language models (MLMs) to pre-trained machine reading comprehension (MRC) models without acquiring labeled data. PMR can resolve the discrepancy between model pre-training and downstream fine-tuning of existing MLMs. To build the proposed PMR, we constructed a large volume of general-purpose and high-quality MRC-style training data by using Wikipedia hyperlinks and designed a Wiki Anchor Extraction task to guide the MRC-style pre-training. Apart from its simplicity, PMR effectively solves extraction tasks, such as Extractive Question Answering and Named Entity Recognition. PMR shows tremendous improvements over existing approaches, especially in low-resource scenarios. When applied to the sequence classification task in the MRC formulation, PMR enables the extraction of high-quality rationales to explain the classification process, thereby providing greater prediction explainability. PMR also has the potential to serve as a unified model for tackling various extraction and classification tasks in the MRC formulation.

Neural information retrieval requires costly annotated data for each target domain to be competitive. Synthetic annotation by query generation using Large Language Models or rulebased string manipulation has been proposed as an alternative, but their relative merits have not been analysed. In this paper, we compare both methods head-to-head using the same neural IR architecture. We focus on the BEIR benchmark, which includes test datasets from several domains with no training data, and explore two scenarios: zero-shot, where the supervised system is trained in a large out-ofdomain dataset (MS-MARCO); and unsupervised Figure 1: Experimental design: (left) a supervised retriever domain adaptation, where, in addition to is trained with manual annotations from MS-MS-MARCO, the system is fine-tuned in synthetic MARCO; (middle) an unsupervised retriever is trained data from the target domain. Our results with automatically generated queries for MS-MARCO indicate that Large Language Models outperform documents; (right) an unsupervised domain adaptation rule-based methods in all scenarios by a retriever is trained with both MS-MARCO manual annotations large margin, and, more importantly, that unsupervised and automatically generated queries in-domain domain adaptation is effective compared BEIR dataset documents. Evaluation is performed in to applying a supervised IR system in a BEIR producing two scenarios: zero-shot (left and middle zero-shot fashion. In addition we explore several retrievers); unsupervised domain adaptation (right sizes of open Large Language Models to retriever).

Automatic Keyphrase Extraction involves identifying essential phrases in a document. These keyphrases are crucial in various tasks such as document classification, clustering, recommendation, indexing, searching, summarization, and text simplification. This paper introduces a platform that integrates keyphrase datasets and facilitates the evaluation of keyphrase extraction algorithms. The platform includes BibRank, an automatic keyphrase extraction algorithm that leverages a rich dataset obtained by parsing bibliographic data in BibTeX format. BibRank combines innovative weighting techniques with positional, statistical, and word co-occurrence information to extract keyphrases from documents. The platform proves valuable for researchers and developers seeking to enhance their keyphrase extraction algorithms and advance the field of natural language processing.

Dense embedding-based retrieval is now the industry standard for semantic search and ranking problems, like obtaining relevant web documents for a given query. Such techniques use a two-stage process: (a) contrastive learning to train a dual encoder to embed both the query and documents and (b) approximate nearest neighbor search (ANNS) for finding similar documents for a given query. These two stages are disjoint; the learned embeddings might be ill-suited for the ANNS method and vice-versa, leading to suboptimal performance. In this work, we propose End-to-end Hierarchical Indexing -- EHI -- that jointly learns both the embeddings and the ANNS structure to optimize retrieval performance. EHI uses a standard dual encoder model for embedding queries and documents while learning an inverted file index (IVF) style tree structure for efficient ANNS. To ensure stable and efficient learning of discrete tree-based ANNS structure, EHI introduces the notion of dense path embedding that captures the position of a query/document in the tree. We demonstrate the effectiveness of EHI on several benchmarks, including de-facto industry standard MS MARCO (Dev set and TREC DL19) datasets. For example, with the same compute budget, EHI outperforms state-of-the-art (SOTA) in by 0.6% (MRR@10) on MS MARCO dev set and by 4.2% (nDCG@10) on TREC DL19 benchmarks.

Finding approximate stationary points, i.e., points where the gradient is approximately zero, of non-convex but smooth objective functions $f$ over unrestricted $d$-dimensional domains is one of the most fundamental problems in classical non-convex optimization. Nevertheless, the computational and query complexity of this problem are still not well understood when the dimension $d$ of the problem is independent of the approximation error. In this paper, we show the following computational and query complexity results: 1. The problem of finding approximate stationary points over unrestricted domains is PLS-complete. 2. For $d = 2$, we provide a zero-order algorithm for finding $\varepsilon$-approximate stationary points that requires at most $O(1/\varepsilon)$ value queries to the objective function. 3. We show that any algorithm needs at least $\Omega(1/\varepsilon)$ queries to the objective function and/or its gradient to find $\varepsilon$-approximate stationary points when $d=2$. Combined with the above, this characterizes the query complexity of this problem to be $\Theta(1/\varepsilon)$. 4. For $d = 2$, we provide a zero-order algorithm for finding $\varepsilon$-KKT points in constrained optimization problems that requires at most $O(1/\sqrt{\varepsilon})$ value queries to the objective function. This closes the gap between the works of Bubeck and Mikulincer [2020] and Vavasis [1993] and characterizes the query complexity of this problem to be $\Theta(1/\sqrt{\varepsilon})$. 5. Combining our results with the recent result of Fearnley et al. [2022], we show that finding approximate KKT points in constrained optimization is reducible to finding approximate stationary points in unconstrained optimization but the converse is impossible.

Recently, contrastive learning has become a key component in fine-tuning code search models for software development efficiency and effectiveness. It pulls together positive code snippets while pushing negative samples away given search queries. Among contrastive learning, InfoNCE is the most widely used loss function due to its better performance. However, the following problems in negative samples of InfoNCE may deteriorate its representation learning: 1) The existence of false negative samples in large code corpora due to duplications. 2). The failure to explicitly differentiate between the potential relevance of negative samples. As an example, a bubble sorting algorithm example is less ``negative'' than a file saving function for the quick sorting algorithm query. In this paper, we tackle the above problems by proposing a simple yet effective Soft-InfoNCE loss that inserts weight terms into InfoNCE. In our proposed loss function, we apply three methods to estimate the weights of negative pairs and show that the vanilla InfoNCE loss is a special case of Soft-InfoNCE. Theoretically, we analyze the effects of Soft-InfoNCE on controlling the distribution of learnt code representations and on deducing a more precise mutual information estimation. We furthermore discuss the superiority of proposed loss functions with other design alternatives. Extensive experiments demonstrate the effectiveness of Soft-InfoNCE and weights estimation methods under state-of-the-art code search models on a large-scale public dataset consisting of six programming languages. Source code is available at \url{https://github.com/Alex-HaochenLi/Soft-InfoNCE}.

This paper introduces a simple yet effective query expansion approach, denoted as query2doc, to improve both sparse and dense retrieval systems. The proposed method first generates pseudo-documents by few-shot prompting large language models (LLMs), and then expands the query with generated pseudo-documents. LLMs are trained on web-scale text corpora and are adept at knowledge memorization. The pseudo-documents from LLMs often contain highly relevant information that can aid in query disambiguation and guide the retrievers. Experimental results demonstrate that query2doc boosts the performance of BM25 by 3% to 15% on ad-hoc IR datasets, such as MS-MARCO and TREC DL, without any model fine-tuning. Furthermore, our method also benefits state-of-the-art dense retrievers in terms of both in-domain and out-of-domain results.

The exponential growth in scholarly publications necessitates advanced tools for efficient article retrieval, especially in interdisciplinary fields where diverse terminologies are used to describe similar research. Traditional keyword-based search engines often fall short in assisting users who may not be familiar with specific terminologies. To address this, we present a knowledge graph-based paper search engine for biomedical research to enhance the user experience in discovering relevant queries and articles. The system, dubbed DiscoverPath, employs Named Entity Recognition (NER) and part-of-speech (POS) tagging to extract terminologies and relationships from article abstracts to create a KG. To reduce information overload, DiscoverPath presents users with a focused subgraph containing the queried entity and its neighboring nodes and incorporates a query recommendation system, enabling users to iteratively refine their queries. The system is equipped with an accessible Graphical User Interface that provides an intuitive visualization of the KG, query recommendations, and detailed article information, enabling efficient article retrieval, thus fostering interdisciplinary knowledge exploration. DiscoverPath is open-sourced at https://github.com/ynchuang/DiscoverPath.

Question answering over RDF data like knowledge graphs has been greatly advanced, with a number of good systems providing crisp answers for natural language questions or telegraphic queries. Some of these systems incorporate textual sources as additional evidence for the answering process, but cannot compute answers that are present in text alone. Conversely, the IR and NLP communities have addressed QA over text, but such systems barely utilize semantic data and knowledge. This paper presents a method for complex questions that can seamlessly operate over a mixture of RDF datasets and text corpora, or individual sources, in a unified framework. Our method, called UNIQORN, builds a context graph on-the-fly, by retrieving question-relevant evidences from the RDF data and/or a text corpus, using fine-tuned BERT models. The resulting graph typically contains all question-relevant evidences but also a lot of noise. UNIQORN copes with this input by a graph algorithm for Group Steiner Trees, that identifies the best answer candidates in the context graph. Experimental results on several benchmarks of complex questions with multiple entities and relations, show that UNIQORN significantly outperforms state-of-the-art methods for heterogeneous QA -- in a full training mode, as well as in zero-shot settings. The graph-based methodology provides user-interpretable evidence for the complete answering process.

How much private information do text embeddings reveal about the original text? We investigate the problem of embedding \textit{inversion}, reconstructing the full text represented in dense text embeddings. We frame the problem as controlled generation: generating text that, when reembedded, is close to a fixed point in latent space. We find that although a na\"ive model conditioned on the embedding performs poorly, a multi-step method that iteratively corrects and re-embeds text is able to recover $92\%$ of $32\text{-token}$ text inputs exactly. We train our model to decode text embeddings from two state-of-the-art embedding models, and also show that our model can recover important personal information (full names) from a dataset of clinical notes. Our code is available on Github: \href{https://github.com/jxmorris12/vec2text}{github.com/jxmorris12/vec2text}.