Probabilistic latent variable models are one of the cornerstones of machine learning. They offer a convenient and coherent way to specify prior distributions over unobserved structure in data, so that these unknown properties can be inferred via posterior inference. Such models are useful for exploratory analysis and visualization, for building density models of data, and for providing features that can be used for later discriminative tasks. A significant limitation of these models, however, is that draws from the prior are often highly redundant due to i.i.d. assumptions on internal parameters. For example, there is no preference in the prior of a mixture model to make components non-overlapping, or in topic model to ensure that co-ocurring words only appear in a small number of topics. In this work, we revisit these independence assumptions for probabilistic latent variable models, replacing the underlying i.i.d.\ prior with a determinantal point process (DPP). The DPP allows us to specify a preference for diversity in our latent variables using a positive definite kernel function. Using a kernel between probability distributions, we are able to define a DPP on probability measures. We show how to perform MAP inference with DPP priors in latent Dirichlet allocation and in mixture models, leading to better intuition for the latent variable representation and quantitatively improved unsupervised feature extraction, without compromising the generative aspects of the model.

Factor analysis models effectively summarise the covariance structure of high dimensional data,but the solutions are typically hard to interpret. This motivates attempting to find a disjoint partition, i.e. a simple clustering, of observed variables into highly correlated subsets. We introduce a Bayesian nonparametric approach to this problem, and demonstrate advantages over heuristic methods proposed to date. Our Dirichlet process variable clustering (DPVC) model can discover blockdiagonal covariancestructures in data. We evaluate our method on both synthetic and gene expression analysis problems.

We introduce a new prior for use in Nonparametric Bayesian Hierarchical Clustering. The prior is constructed by marginalizing out the time information of Kingman’s coalescent, providing a prior over tree structures which we call the Time-Marginalized Coalescent (TMC). This allows for models which factorize the tree structure and times, providing two benefits: more flexible priors may be constructed and more efficient Gibbs type inference can be used. We demonstrate this on an example model for density estimation and show the TMC achieves competitive experimental results.

In many graph-based machine learning and data mining approaches, the quality of the graph is critical. However, in real-world applications, especially in semi-supervised learning and unsupervised learning, the evaluation of the quality of a graph is often expensive and sometimes even impossible, due the cost or the unavailability of ground truth. In this paper, we proposed a robust approach with convex optimization to ``forge'' a graph: with an input of a graph, to learn a graph with higher quality. Our major concern is that an ideal graph shall satisfy all the following constraints: non-negative, symmetric, low rank, and positive semidefinite. We develop a graph learning algorithm by solving a convex optimization problem and further develop an efficient optimization to obtain global optimal solutions with theoretical guarantees. With only one non-sensitive parameter, our method is shown by experimental results to be robust and achieve higher accuracy in semi-supervised learning and clustering under various settings. As a preprocessing of graphs, our method has a wide range of potential applications machine learning and data mining.

The use of machine learning algorithms frequently involves careful tuning of learning parameters and model hyperparameters. Unfortunately, this tuning is often a “black art” requiring expert experience, rules of thumb, or sometimes brute-force search. There is therefore great appeal for automatic approaches that can optimize the performance of any given learning algorithm to the problem at hand. In this work, we consider this problem through the framework of Bayesian optimization, in which a learning algorithm’s generalization performance is modeled as a sample from a Gaussian process (GP). We show that certain choices for the nature of the GP, such as the type of kernel and the treatment of its hyperparameters, can play a crucial role in obtaining a good optimizer that can achieve expert-level performance. We describe new algorithms that take into account the variable cost (duration) of learning algorithm experiments and that can leverage the presence of multiple cores for parallel experimentation. We show that these proposed algorithms improve on previous automatic procedures and can reach or surpass human expert-level optimization for many algorithms including Latent Dirichlet Allocation, Structured SVMs and convolutional neural networks.

We introduce a class of discrete divergences on sets (equivalently binary vectors) that we call the submodular-Bregman divergences. We consider two kinds, defined either from tight modular upper or tight modular lower bounds of a submodular function. We show that the properties of these divergences are analogous to the (standard continuous) Bregman divergence. We demonstrate how they generalize many useful divergences, including the weighted Hamming distance, squared weighted Hamming, weighted precision, recall, conditional mutual information, and a generalized KL-divergence on sets. We also show that the generalized Bregman divergence on the Lovász extension of a submodular function, which we call the Lovász-Bregman divergence, is a continuous extension of a submodular Bregman divergence. We point out a number of applications, and in particular show that a proximal algorithm defined through the submodular Bregman divergence provides aframework for many mirror-descent style algorithms related to submodular function optimization. We also show that a generalization of the k-means algorithm using the Lovász Bregman divergence is natural in clustering scenarios where ordering is important. A unique property of this algorithm is that computing the mean ordering is extremely efficient unlike other order based distance measures.

One of the enduring challenges in Markov chain Monte Carlo methodology is the development of proposal mechanisms to make moves distant from the current point, that are accepted with high probability and at low computational cost. The recent introduction of locally adaptive MCMC methods based on the natural underlying Riemannian geometry of such models goes some way to alleviating these problems for certain classes of models for which the metric tensor is analytically tractable, however computational efficiency is not assured due to the necessity of potentially high-dimensional matrix operations at each iteration. In this paper we firstly investigate a sampling-based approach for approximating the metric tensor and suggest a valid MCMC algorithm that extends the applicability of Riemannian Manifold MCMC methods to statistical models that do not admit an analytically computable metric tensor. Secondly, we show how the approximation scheme we consider naturally motivates the use of l1 regularisation to improve estimates and obtain a sparse approximate inverse of the metric, which enables stable and sparse approximations of the local geometry to be made. We demonstrate the application of this algorithm for inferring the parameters of a realistic system of ordinary differential equations using a biologically motivated robust student-t error model, for which the expected Fisher Information is analytically intractable.

In the paper, we consider the problem of link prediction in time-evolving graphs. We assume that certain graph features, such as the node degree, follow a vector autoregressive (VAR) model and we propose to use this information to improve the accuracy of prediction. Our strategy involves a joint optimization procedure over the space of adjacency matrices and VAR matrices which takes into account both sparsity and low rank properties of the matrices. Oracle inequalities are derived and illustrate the trade-offs in the choice of smoothing parameters when modeling the joint effect of sparsity and low rank property. The estimate is computed efficiently using proximal methods through a generalized forward-backward agorithm.

Linear Support Vector Machines (SVMs) have become very popular in vision as part of state-of-the-art object recognition and other classification tasks but require high dimensional feature spaces for good performance. Deep learning methods can find more compact representations but current methods employ multilayer perceptrons that require solving a difficult, non-convex optimization problem. We propose a deep non-linear classifier whose layers are SVMs and which incorporates random projection as its core stacking element. Our method learns layers of linear SVMs recursively transforming the original data manifold through a random projection of the weak prediction computed from each layer. Our method scales as linear SVMs, does not rely on any kernel computations or nonconvex optimization, and exhibits better generalization ability than kernel-based SVMs. This is especially true when the number of training samples is smaller than the dimensionality of data, a common scenario in many real-world applications. The use of random projections is key to our method, as we show in the experiments section, in which we observe a consistent improvement over previous --often more complicated-- methods on several vision and speech benchmarks.

User preferences for items can be inferred from either explicit feedback, such as item ratings, or implicit feedback, such as rental histories. Research in collaborative filtering has concentrated on explicit feedback, resulting in the development of accurate and scalable models. However, since explicit feedback is often difficult to collect it is important to develop effective models that take advantage of the more widely available implicit feedback. We introduce a probabilistic approach to collaborative filtering with implicit feedback based on modelling the user's item selection process. In the interests of scalability, we restrict our attention to tree-structured distributions over items and develop a principled and efficient algorithm for learning item trees from data. We also identify a problem with a widely used protocol for evaluating implicit feedback models and propose a way of addressing it using a small quantity of explicit feedback data.