Information about the contributions of individual authors to scientific publications is important for assessing authors' achievements. Some biomedical publications have a short section that describes authors' roles and contributions. It is usually written in natural language and hence author contributions cannot be trivially extracted in a machine-readable format. In this paper, we present 1) A statistical analysis of roles in author contributions sections, and 2) Na\"iveRole, a novel approach to extract structured authors' roles from author contribution sections. For the first part, we used co-clustering techniques, as well as Open Information Extraction, to semi-automatically discover the popular roles within a corpus of 2,000 contributions sections from PubMed Central. The discovered roles were used to automatically build a training set for Na\"iveRole, our role extractor approach, based on Na\"ive Bayes. Na\"iveRole extracts roles with a micro-averaged precision of 0.68, recall of 0.48 and F1 of 0.57. It is, to the best of our knowledge, the first attempt to automatically extract author roles from research papers. This paper is an extended version of a previous poster published at JCDL 2018.

The evidence says that liver disease detection using CAD is one of the most efficient techniques but the presence of better organization of studies and the performance parameters to represent the result analysis of the proposed techniques are pointedly missing in most of the recent studies. Few benchmarked studies have been found in some of the papers as benchmarking makes a reader understand that under which circumstances their experimental results or outcomes are better and useful for the future implementation and adoption of the work. Liver diseases and image processing algorithms, especially in medicine, are the most important and important topics of the day. Unfortunately, the necessary data and data, as they are invoked in the articles, are low in this area and require the revision and implementation of policies in order to gather and do more research in this field. Detection with ultrasound is quite normal in liver diseases and depends on the physician's experience and skills. CAD systems are very important for doctors to understand medical images and improve the accuracy of diagnosing various diseases. In the following, we describe the techniques used in the various stages of a CAD system, namely: extracting features, selecting features, and classifying them. Although there are many techniques that are used to classify medical images, it is still a challenging issue for creating a universally accepted approach.

It is now well known that deep neural networks (DNNs) are vulnerable to adversarial attack. Adversarial samples are similar to the clean ones, but are able to cheat the attacked DNN to produce incorrect predictions in high confidence. But most of the existing adversarial attacks have high success rate only when the information of the attacked DNN is well-known or could be estimated by massive queries. A promising way is to generate adversarial samples with high transferability. By this way, we generate 96020 transferable adversarial samples from original ones in ImageNet. The average difference, measured by root means squared deviation, is only around 3.8 on average. However, the adversarial samples are misclassified by various models with an error rate up to 90\%. Since the images are generated independently with the attacked DNNs, this is essentially zero-query adversarial attack. We call the dataset \emph{DAmageNet}, which is the first universal adversarial dataset that beats many models trained in ImageNet. By finding the drawbacks, DAmageNet could serve as a benchmark to study and improve robustness of DNNs. DAmageNet could be downloaded in http://www.pami.sjtu.edu.cn/Show/56/122.

Nonconvex optimization techniques are increasingly playing a major role in modern signal processing, high dimensional statistics, and machine learning. A driving theme, fully supported by empirical evidence, is that simple algorithms often work well in highly non-convex and even nonsmooth settings. Gradient descent, for example, often finds points with small objective value, despite existence of many highly suboptimal critical points. A growing body of literature provides one compelling explanation for this phenomenon. Namely, typical smooth objective functions provably satisfy the strict saddle property, meaning each critical point is either a local minimizer or has a direction of strictly negative curvature (e.g., [6, 29, 30, 62, 63]).

Spike-and-wave discharge (SWD) pattern classification in electroencephalography (EEG) signals is a key problem in signal processing. It is particularly important to develop a SWD automatic detection method in long-term EEG recordings since the task of marking the patters manually is time consuming, difficult and error-prone. This paper presents a new detection method with a low computational complexity that can be easily trained if standard medical protocols are respected. The detection procedure is as follows: First, each EEG signal is divided into several time segments and for each time segment, the Morlet 1-D decomposition is applied. Then three parameters are extracted from the wavelet coefficients of each segment: scale (using a generalized Gaussian statistical model), variance and median. This is followed by a k-nearest neighbors (k-NN) classifier to detect the spike-and-wave pattern in each EEG channel from these three parameters. A total of 106 spike-and-wave and 106 non-spike-and-wave were used for training, while 69 new annotated EEG segments from six subjects were used for classification. In these circumstances, the proposed methodology achieved 100% accuracy. These results generate new research opportunities for the underlying causes of the so-called absence epilepsy in long-term EEG recordings.

This paper develops new methods to recover the missing entries of a high-rank or even full-rank matrix when the intrinsic dimension of the data is low compared to the ambient dimension. Specifically, we assume that the columns of a matrix are generated by polynomials acting on a low-dimensional intrinsic variable, and wish to recover the missing entries under this assumption. We show that we can identify the complete matrix of minimum intrinsic dimension by minimizing the rank of the matrix in a high dimensional feature space. We develop a new formulation of the resulting problem using the kernel trick together with a new relaxation of the rank objective, and propose an efficient optimization method. We also show how to use our methods to complete data drawn from multiple nonlinear manifolds. Comparative studies on synthetic data, subspace clustering with missing data, motion capture data recovery, and transductive learning verify the superiority of our methods over the state-of-the-art.

While sample sizes in randomized clinical trials are large enough to estimate the average treatment effect well, they are often insufficient for estimation of treatment-covariate interactions critical to studying data-driven precision medicine. Observational data from real world practice may play an important role in alleviating this problem. One common approach in trials is to predict the outcome of interest with separate regression models in each treatment arm, and recommend interventions based on the contrast of the predicted outcomes. Unfortunately, this simple approach may induce spurious treatment-covariate interaction in observational studies when the regression model is misspecified. Motivated by the need of modeling the number of relapses in multiple sclerosis patients, where the ratio of relapse rates is a natural choice of the treatment effect, we propose to estimate the conditional average treatment effect (CATE) as the relative ratio of the potential outcomes, and derive a doubly robust estimator of this CATE in a semiparametric model of treatment-covariate interactions. We also provide a validation procedure to check the quality of the estimator on an independent sample. We conduct simulations to demonstrate the finite sample performance of the proposed methods, and illustrate the advantage of this approach on real data examining the treatment effect of dimethyl fumarate compared to teriflunomide in multiple sclerosis patients.

Detecting biases in artificial intelligence has become difficult because of the impenetrable nature of deep learning. The central difficulty is in relating unobservable phenomena deep inside models with observable, outside quantities that we can measure from inputs and outputs. For example, can we detect gendered perceptions of occupations (e.g., female librarian, male electrician) using questions to and answers from a word embedding-based system? Current techniques for detecting biases are often customized for a task, dataset, or method, affecting their generalization. In this work, we draw from Psychophysics in Experimental Psychology---meant to relate quantities from the real world (i.e., "Physics") into subjective measures in the mind (i.e., "Psyche")---to propose an intellectually coherent and generalizable framework to detect biases in AI. Specifically, we adapt the two-alternative forced choice task (2AFC) to estimate potential biases and the strength of those biases in black-box models. We successfully reproduce previously-known biased perceptions in word embeddings and sentiment analysis predictions. We discuss how concepts in experimental psychology can be naturally applied to understanding artificial mental phenomena, and how psychophysics can form a useful methodological foundation to study fairness in AI.

We consider the problem of learning generalized first-order representations of concepts from a single example. To address this challenging problem, we augment an inductive logic programming learner with two novel algorithmic contributions. First, we define a distance measure between candidate concept representations that improves the efficiency of search for target concept and generalization. Second, we leverage richer human inputs in the form of advice to improve the sample-efficiency of learning. We prove that the proposed distance measure is semantically valid and use that to derive a P AC bound. Our experimental analysis on diverse concept learning tasks demonstrates both the effectiveness and efficiency of the proposed approach over a first-order concept learner using only examples.

Based on a joint work with Aryan Mokhtari, UT Austin, and Asu Ozdaglar, MIT. Imagine sitting in your autonomous car, going for a vacation. Your vehicle should follow the directions provided by the navigation app, and also use multiple sensors to monitor other vehicles, road signs, street light, etc. As a result, during the course of your journey, your car might need to take actions within a few seconds, such as turning or stopping. The question is how should your vehicle be programmed to be able to adapt to the new tasks within a short amount of time and limited data.