Statistical Learning
Automatic Visual Instrumental Variable Learning for Confounding-Resistant Domain Generalization
Many confounding-resistant domain generalization methods for image classification have been developed based on causal interventions. However, their reliance on strong assumptions limits their effectiveness in handling unobserved confounders. Although recent work introduces instrumental variables (IVs) to overcome this limitation, the reliance on manually predefined instruments, particularly in the context of visual data, may result in severe bias or invalidity when IV conditions are violated. To address these issues, we propose a novel approach to automatically learning Visual Instrumental Variables for confounding-resistant Domain Generalization (VIV-DG). We observe that certain non-causal visual attributes in image data naturally satisfy the basic conditions required for valid IVs. Motivated by this insight, we propose the visual instrumental variable, a novel concept that extends classical IV theory to the visual domain. Furthermore, we develop an automatic visual instrumental variable learner that enforces IV conditions on learned representations, enabling the automatic learning of valid visual instrumental variables from image data. Ultimately, VIV-DG inherits the strengths of classical IVs to mitigate unobserved confounding and avoids the significant bias caused by violations of IV conditions in predefined IVs. Extensive experiments on multiple benchmarks verify that VIV-DG achieves superior generalization ability.
GeneFlow: Translation of Single-cell Gene Expression to Histopathological Images via Rectified Flow
Spatial transcriptomics technologies can be used to align transcriptomes with histopathological morphology, presenting exciting new opportunities for biomolecular discovery. Using spatial transcriptomic gene expression and corresponding histology data, we construct a novel framework, GeneFlow, to map single-and multi-cell gene expression onto paired cellular images. By combining an attentionbased RNA encoder with a conditional UNet guided by rectified flow, we generate high-resolution images with different staining methods (e.g., H&E, DAPI) to highlight various cellular/ tissue structures. Rectified flow with high-order ODE solvers creates a continuous, bijective mapping between expression and image manifolds, addressing the many-to-one relationship inherent in this problem. Our method enables the generation of realistic cellular morphology features and spatially resolved intercellular interactions under genetic or chemical perturbations. This enables minimally invasive disease diagnosis by revealing dysregulated patterns in imaging phenotypes. Our rectified flow based method outperforms diffusion methods and baselines in all experiments.
Causal Mixture Models: Characterization and Discovery
Real-world datasets are often a combination of unobserved subpopulations that follow distinct causal generating processes. In an observational study, for example, participants may fall into unknown groups that either (a) respond effectively to a drug, or (b) show no response due to drug resistance. Not accounting for such heterogeneity then risks biased estimates of drug effectiveness. In this work, we formulate this setting through a causal mixture model, in which the data-generating process of each variable depends on latent group membership (a or b).
Ascent Fails to Forget
Contrary to common belief, we show that gradient ascent-based unconstrained optimization methods frequently fail to perform machine unlearning, a phenomenon we attribute to the inherent statistical dependence between the forget and retain data sets. This dependence, which can manifest itself even as simple correlations, undermines the misconception that these sets can be independently manipulated during unlearning. We provide empirical and theoretical evidence showing these methods often fail precisely due to this overlooked relationship. For random forget sets, this dependence means that degrading forget set metrics (which, for the oracle, should mirror test set metrics) inevitably harms overall test performance. Going beyond random sets, we consider logistic regression as an instructive example where a critical failure mode emerges: inter-set dependence causes gradient descentascent iterations to progressively diverge from the oracle. Strikingly, these methods can converge to solutions that are not only far from the oracle but are potentially even further from it than the original model itself, rendering the unlearning process actively detrimental. A toy example further illustrates how this dependence can trap models in inferior local minima, inescapable via finetuning. Our findings highlight that the presence of such statistical dependencies, even when manifest only as correlations, can be sufficient for ascent-based unlearning to fail. Our theoretical insights are corroborated by experiments on complex neural networks, demonstrating that these methods do not perform as expected in practice due to this unaddressed statistical interplay.
Differential Privacy for Euclidean Jordan Algebra with Applications to Private Symmetric Cone Programming
In this paper, we study differentially private mechanisms for functions whose outputs lie in a Euclidean Jordan algebra. Euclidean Jordan algebras capture many important mathematical structures and form the foundation of linear programming, second-order cone programming, and semidefinite programming. Our main contribution is a generic Gaussian mechanism for such functions, with sensitivity measured in ℓ2, ℓ1, and ℓ norms. Notably, this framework includes the important case where the function outputs are symmetric matrices, and sensitivity is measured in the Frobenius, nuclear, or spectral norm. We further derive private algorithms for solving symmetric cone programs under various settings, using a combination of the multiplicative weights update method and our generic Gaussian mechanism. As an application, we present differentially private algorithms for semidefinite programming, resolving a major open question posed by [Hsu, Roth, Roughgarden, and Ullman, ICALP 2014].
PointMAC: Meta-Learned Adaptation for Robust Test-Time Point Cloud Completion
Point cloud completion is essential for robust 3D perception in safety-critical applications such as robotics and augmented reality. However, existing models perform static inference and rely heavily on inductive biases learned during training, limiting their ability to adapt to novel structural patterns and sensor-induced distortions at test time. To address this limitation, we propose PointMAC, a meta-learned framework for robust test-time adaptation in point cloud completion. It enables sample-specific refinement without requiring additional supervision. Our method optimizes the completion model under two self-supervised auxiliary objectives that simulate structural and sensor-level incompleteness.
Understanding Generalization in Physics Informed Models through Affine Variety Dimensions
Physics-informed machine learning is gaining significant traction for enhancing statistical performance and sample efficiency through the integration of physical knowledge. However, current theoretical analyses often presume complete prior knowledge in non-hybrid settings, overlooking the crucial integration of observational data, and are frequently limited to linear systems, unlike the prevalent nonlinear nature of many real-world applications. To address these limitations, we introduce a unified residual form that unifies collocation and variational methods, enabling the incorporation of incomplete and complex physical constraints in hybrid learning settings. Within this formulation, we establish that the generalization performance of physics-informed regression in such hybrid settings is governed by the dimension of the affine variety associated with the physical constraint, rather than by the number of parameters. This enables a unified analysis that is applicable to both linear and nonlinear equations. We also present a method to approximate this dimension and provide experimental validation of our theoretical findings.
Spurious-Aware Prototype Refinement for Reliable Out-of-Distribution Detection
Out-of-distribution (OOD) detection is crucial for ensuring the reliability and safety of machine learning models in real-world applications, where they frequently face data distributions unseen during training. Despite progress, existing methods are often vulnerable to spurious correlations that mislead models and compromise robustness. To address this, we propose SPROD, a novel prototype-based OOD detection approach that explicitly addresses the challenge posed by unknown spurious correlations. Our post-hoc method refines class prototypes to mitigate bias from spurious features without additional data or hyperparameter tuning, and is broadly applicable across diverse backbones and OOD detection settings. We conduct a comprehensive spurious correlation OOD detection benchmarking, comparing our method against existing approaches and demonstrating its superior performance across challenging OOD datasets, such as CelebA, Waterbirds, UrbanCars, Spurious Imagenet, and the newly introduced Animals MetaCoCo. On average, SPROD improves AUROC by 4.8% and FPR@95 by 9.4% over the second best.
CPSea: Large-scale cyclic peptide-protein complex dataset for machinelearning in cyclic peptide design
Cyclic peptides exhibit better binding affinity and proteolytic stability compared to their linear counterparts. However, the development of cyclic peptide design models is hindered by the scarcity of data. To address this, we introduce CPSea(Cyclic Peptide Sea), a dataset of 2.71 million cyclic peptide-receptor complexes, curated through systematic mining of the AlphaFold Database (AFDB). Our pipeline extracts compact domains from AFDB, identifies cyclization sites using the β-carbon (Cβ) distance thresholds, and applies multi-stage filtering to ensure structure fidelity and binding compatibility. Compared with experimental data of cyclic peptides, CPSea shows similar distributions in metrics on structure fidelity and wet-lab compatibility. To our knowledge, CPSea is the largest cyclic peptide-receptor dataset to date, enabling end-to-end model training for the first time.