Statistical Learning
Survival Cluster Analysis
Chapfuwa, Paidamoyo, Li, Chunyuan, Mehta, Nikhil, Carin, Lawrence, Henao, Ricardo
Conventional survival analysis approaches estimate risk scores or individualized time-to-event distributions conditioned on covariates. In practice, there is often great population-level phenotypic heterogeneity, resulting from (unknown) subpopulations with diverse risk profiles or survival distributions. As a result, there is an unmet need in survival analysis for identifying subpopulations with distinct risk profiles, while jointly accounting for accurate individualized time-to-event predictions. An approach that addresses this need is likely to improve characterization of individual outcomes by leveraging regularities in subpopulations, thus accounting for population-level heterogeneity. In this paper, we propose a Bayesian nonparametrics approach that represents observations (subjects) in a clustered latent space, and encourages accurate time-to-event predictions and clusters (subpopulations) with distinct risk profiles. Experiments on real-world datasets show consistent improvements in predictive performance and interpretability relative to existing state-of-the-art survival analysis models.
Calibrated Prediction with Covariate Shift via Unsupervised Domain Adaptation
Park, Sangdon, Bastani, Osbert, Weimer, James, Lee, Insup
Reliable uncertainty estimates are an important tool for helping autonomous agents or human decision makers understand and leverage predictive models. However, existing approaches to estimating uncertainty largely ignore the possibility of covariate shift--i.e., where the real-world data distribution may differ from the training distribution. As a consequence, existing algorithms can overestimate certainty, possibly yielding a false sense of confidence in the predictive model. We propose an algorithm for calibrating predictions that accounts for the possibility of covariate shift, given labeled examples from the training distribution and unlabeled examples from the real-world distribution. Our algorithm uses importance weighting to correct for the shift from the training to the real-world distribution. However, importance weighting relies on the training and real-world distributions to be sufficiently close. Building on ideas from domain adaptation, we additionally learn a feature map that tries to equalize these two distributions. In an empirical evaluation, we show that our proposed approach outperforms existing approaches to calibrated prediction when there is covariate shift.
Dimension-free convergence rates for gradient Langevin dynamics in RKHS
Muzellec, Boris, Sato, Kanji, Massias, Mathurin, Suzuki, Taiji
Gradient Langevin dynamics (GLD) and stochastic GLD (SGLD) have attracted considerable attention lately, as a way to provide convergence guarantees in a non-convex setting. However, the known rates grow exponentially with the dimension of the space. In this work, we provide a convergence analysis of GLD and SGLD when the optimization space is an infinite dimensional Hilbert space. More precisely, we derive non-asymptotic, dimension-free convergence rates for GLD/SGLD when performing regularized non-convex optimization in a reproducing kernel Hilbert space. Amongst others, the convergence analysis relies on the properties of a stochastic differential equation, its discrete time Galerkin approximation and the geometric ergodicity of the associated Markov chains.
Online Binary Space Partitioning Forests
Fan, Xuhui, Li, Bin, Sisson, Scott A.
The Binary Space Partitioning-Tree~(BSP-Tree) process was recently proposed as an efficient strategy for space partitioning tasks. Because it uses more than one dimension to partition the space, the BSP-Tree Process is more efficient and flexible than conventional axis-aligned cutting strategies. However, due to its batch learning setting, it is not well suited to large-scale classification and regression problems. In this paper, we develop an online BSP-Forest framework to address this limitation. With the arrival of new data, the resulting online algorithm can simultaneously expand the space coverage and refine the partition structure, with guaranteed universal consistency for both classification and regression problems. The effectiveness and competitive performance of the online BSP-Forest is verified via simulations on real-world datasets.
An End-to-End Graph Convolutional Kernel Support Vector Machine
A novel kernel-based support vector machine (SVM) for graph classification is proposed. The SVM feature space mapping consists of a sequence of graph convolutional layers, which generates a vector space representation for each vertex, followed by a pooling layer which generates a reproducing kernel Hilbert space (RKHS) representation for the graph. The use of a RKHS offers the ability to implicitly operate in this space using a kernel function without the computational complexity of explicitly mapping into it. The proposed model is trained in a supervised end-to-end manner whereby the convolutional layers, the kernel function and SVM parameters are jointly optimized with respect to a regularized classification loss. This approach is distinct from existing kernel-based graph classification models which instead either use feature engineering or unsupervised learning to define the kernel function. Experimental results demonstrate that the proposed model outperforms existing deep learning baseline models on a number of datasets.
Deep differentiable forest with sparse attention for the tabular data
We present a general architecture of deep differentiable forest and its sparse attention mechanism. The differentiable forest has the advantages of both trees and neural networks. Its structure is a simple binary tree, easy to use and understand. It has full differentiability and all variables are learnable parameters. We would train it by the gradient-based optimization method, which shows great power in the training of deep CNN. We find and analyze the attention mechanism in the differentiable forest. That is, each decision depends on only a few important features, and others are irrelevant. The attention is always sparse. Based on this observation, we improve its sparsity by data-aware initialization. We use the attribute importance to initialize the attention weight. Then the learned weight is much sparse than that from random initialization. Our experiment on some large tabular dataset shows differentiable forest has higher accuracy than GBDT, which is the state of art algorithm for tabular datasets. The source codes are available at https://github.com/closest-git/QuantumForest
Multiplicative Gaussian Particle Filter
Su, Xuan, Lee, Wee Sun, Zhang, Zhen
We propose a new sampling-based approach for approximate inference in filtering problems. Instead of approximating conditional distributions with a finite set of states, as done in particle filters, our approach approximates the distribution with a weighted sum of functions from a set of continuous functions. Central to the approach is the use of sampling to approximate multiplications in the Bayes filter. We provide theoretical analysis, giving conditions for sampling to give good approximation. We next specialize to the case of weighted sums of Gaussians, and show how properties of Gaussians enable closed-form transition and efficient multiplication. Lastly, we conduct preliminary experiments on a robot localization problem and compare performance with the particle filter, to demonstrate the potential of the proposed method.
Generating EEG features from Acoustic features
Krishna, Gautam, Tran, Co, Carnahan, Mason, Han, Yan, Tewfik, Ahmed H
In this paper we demonstrate predicting electroencephalograpgy (EEG) features from acoustic features using recurrent neural network (RNN) based regression model and generative adversarial network (GAN). We predict various types of EEG features from acoustic features. We compare our results with the previously studied problem on speech synthesis using EEG and our results demonstrate that EEG features can be generated from acoustic features with lower root mean square error (RMSE), normalized RMSE values compared to generating acoustic features from EEG features (ie: speech synthesis using EEG) when tested using the same data sets.
A Hierarchy of Limitations in Machine Learning
There is little argument about whether or not machine learning models are useful for applying to social systems. But if we take seriously George Box's dictum, or indeed the even older one that "the map is not the territory' (Korzybski, 1933), then there has been comparatively less systematic attention paid within the field to how machine learning models are wrong (Selbst et al., 2019) and seeing possible harms in that light. By "wrong" I do not mean in terms of making misclassifications, or even fitting over the'wrong' class of functions, but more fundamental mathematical/statistical assumptions, philosophical (in the sense used by Abbott, 1988) commitments about how we represent the world, and sociological processes of how models interact with target phenomena. This paper takes a particular model of machine learning research or application: one that its creators and deployers think provides a reliable way of interacting with the social world (whether that is through understanding, or in making predictions) without any intent to cause harm (McQuillan, 2018) and, in fact, a desire to not cause harm and instead improve the world, 1 for example as most explicitly in the various "{Data [Science], Machine Learning, Artificial Intelligence} for [Social] Good" initiatives, and more widely in framings around "fairness" or "ethics." I focus on the almost entirely statistical modern version of machine learning, rather than eclipsed older visions (see section 3). While many of the limitations I discuss apply to the use of machine learning in any domain, I focus on applications to the social world in order to explore the domain where limitations are strongest and stickiest.
Deep Active Learning for Biased Datasets via Fisher Kernel Self-Supervision
Gudovskiy, Denis, Hodgkinson, Alec, Yamaguchi, Takuya, Tsukizawa, Sotaro
Active learning (AL) aims to minimize labeling efforts for data-demanding deep neural networks (DNNs) by selecting the most representative data points for annotation. However, currently used methods are ill-equipped to deal with biased data. The main motivation of this paper is to consider a realistic setting for pool-based semi-supervised AL, where the unlabeled collection of train data is biased. We theoretically derive an optimal acquisition function for AL in this setting. It can be formulated as distribution shift minimization between unlabeled train data and weakly-labeled validation dataset. To implement such acquisition function, we propose a low-complexity method for feature density matching using self-supervised Fisher kernel (FK) as well as several novel pseudo-label estimators. Our FK-based method outperforms state-of-the-art methods on MNIST, SVHN, and ImageNet classification while requiring only 1/10th of processing. The conducted experiments show at least 40% drop in labeling efforts for the biased class-imbalanced data compared to existing methods.