Topic modelling is a prominent task for automatic topic extraction in many applications such as sentiment analysis and recommendation systems. The approach is vital for service industries to monitor their customer discussions. The use of traditional approaches such as Latent Dirichlet Allocation (LDA) for topic discovery has shown great performances, however, they are not consistent in their results as these approaches suffer from data sparseness and inability to model the word order in a document. Thus, this study presents the use of Kernel Principal Component Analysis (KernelPCA) and K-means Clustering in the BERTopic architecture. We have prepared a new dataset using tweets from customers of Nigerian banks and we use this to compare the topic modelling approaches. Our findings showed KernelPCA and K-means in the BERTopic architecture-produced coherent topics with a coherence score of 0.8463.

We theoretically study how differential privacy interacts with both individual and group fairness in binary linear classification. More precisely, we focus on the output perturbation mechanism, a classic approach in privacy-preserving machine learning. We derive high-probability bounds on the level of individual and group fairness that the perturbed models can achieve compared to the original model. Hence, for individual fairness, we prove that the impact of output perturbation on the level of fairness is bounded but grows with the dimension of the model. For group fairness, we show that this impact is determined by the distribution of so-called angular margins, that is signed margins of the non-private model re-scaled by the norm of each example.

Morphological neural networks, or layers, can be a powerful tool to boost the progress in mathematical morphology, either on theoretical aspects such as the representation of complete lattice operators, or in the development of image processing pipelines. However, these architectures turn out to be difficult to train when they count more than a few morphological layers, at least within popular machine learning frameworks which use gradient descent based optimization algorithms. In this paper we investigate the potential and limitations of differentiation based approaches and back-propagation applied to morphological networks, in light of the non-smooth optimization concept of Bouligand derivative. We provide insights and first theoretical guidelines, in particular regarding initialization and learning rates.

Explainable AI (XAI) has demonstrated the potential to help reinforcement learning (RL) practitioners to understand how RL models work. However, XAI for users who do not have RL expertise (non-RL experts), has not been studied sufficiently. This results in a difficulty for the non-RL experts to participate in the fundamental discussion of how RL models should be designed for an incoming society where humans and AI coexist. Solving such a problem would enable RL experts to communicate with the non-RL experts in producing machine learning solutions that better fit our society. We argue that abstracted trajectories, that depicts transitions between the major states of the RL model, will be useful for non-RL experts to build a mental model of the agents. Our early results suggest that by leveraging a visualization of the abstracted trajectories, users without RL expertise are able to infer the behavior patterns of RL.

Hugging Face (HF) has established itself as a crucial platform for the development and sharing of machine learning (ML) models. This repository mining study, which delves into more than 380,000 models using data gathered via the HF Hub API, aims to explore the community engagement, evolution, and maintenance around models hosted on HF, aspects that have yet to be comprehensively explored in the literature. We first examine the overall growth and popularity of HF, uncovering trends in ML domains, framework usage, authors grouping and the evolution of tags and datasets used. Through text analysis of model card descriptions, we also seek to identify prevalent themes and insights within the developer community. Our investigation further extends to the maintenance aspects of models, where we evaluate the maintenance status of ML models, classify commit messages into various categories (corrective, perfective, and adaptive), analyze the evolution across development stages of commits metrics and introduce a new classification system that estimates the maintenance status of models based on multiple attributes. This study aims to provide valuable insights about ML model maintenance and evolution that could inform future model development strategies on platforms like HF.

To estimate accurately the parameters of a regression model, the sample size must be large enough relative to the number of possible predictors for the model. In practice, sufficient data is often lacking, which can lead to overfitting of the model and, as a consequence, unreliable predictions of the outcome of new patients. Pooling data from different data sets collected in different (medical) centers would alleviate this problem, but is often not feasible due to privacy regulation or logistic problems. An alternative route would be to analyze the local data in the centers separately and combine the statistical inference results with the Bayesian Federated Inference (BFI) methodology. The aim of this approach is to compute from the inference results in separate centers what would have been found if the statistical analysis was performed on the combined data. We explain the methodology under homogeneity and heterogeneity across the populations in the separate centers, and give real life examples for better understanding. Excellent performance of the proposed methodology is shown. An R-package to do all the calculations has been developed and is illustrated in this paper. The mathematical details are given in the Appendix.

We focus on learning the smoothing distribution, i.e. the joint distribution of the latent states given the observations, using a variational approach together with Monte Carlo importance sampling. We propose an efficient algorithm for computing the gradient of the evidence lower bound (ELBO) in the context of streaming data, where observations arrive sequentially. Our contributions include a computationally efficient online ELBO estimator, demonstrated performance in offline and true online settings, and adaptability for computing general expectations under joint smoothing distributions.

There is a significant interest in exploring non-linear associations among multiple images derived from diverse imaging modalities. While there is a growing literature on image-on-image regression to delineate predictive inference of an image based on multiple images, existing approaches have limitations in efficiently borrowing information between multiple imaging modalities in the prediction of an image. Building on the literature of Variational Auto Encoders (VAEs), this article proposes a novel approach, referred to as Integrative Variational Autoencoder (\texttt{InVA}) method, which borrows information from multiple images obtained from different sources to draw predictive inference of an image. The proposed approach captures complex non-linear association between the outcome image and input images, while allowing rapid computation. Numerical results demonstrate substantial advantages of \texttt{InVA} over VAEs, which typically do not allow borrowing information between input images. The proposed framework offers highly accurate predictive inferences for costly positron emission topography (PET) from multiple measures of cortical structure in human brain scans readily available from magnetic resonance imaging (MRI).

Graph representation learning on vast datasets, like web data, has made significant strides. However, the associated computational and storage overheads raise concerns. In sight of this, Graph condensation (GCond) has been introduced to distill these large real datasets into a more concise yet information-rich synthetic graph. Despite acceleration efforts, existing GCond methods mainly grapple with efficiency, especially on expansive web data graphs. Hence, in this work, we pinpoint two major inefficiencies of current paradigms: (1) the concurrent updating of a vast parameter set, and (2) pronounced parameter redundancy. To counteract these two limitations correspondingly, we first (1) employ the Mean-Field variational approximation for convergence acceleration, and then (2) propose the objective of Gradient Information Bottleneck (GDIB) to prune redundancy. By incorporating the leading explanation techniques (e.g., GNNExplainer and GSAT) to instantiate the GDIB, our EXGC, the Efficient and eXplainable Graph Condensation method is proposed, which can markedly boost efficiency and inject explainability. Our extensive evaluations across eight datasets underscore EXGC's superiority and relevance. Code is available at https://github.com/MangoKiller/EXGC.

Bioinformatics has witnessed a paradigm shift with the increasing integration of artificial intelligence (AI), particularly through the adoption of foundation models (FMs). These AI techniques have rapidly advanced, addressing historical challenges in bioinformatics such as the scarcity of annotated data and the presence of data noise. FMs are particularly adept at handling large-scale, unlabeled data, a common scenario in biological contexts due to the time-consuming and costly nature of experimentally determining labeled data. This characteristic has allowed FMs to excel and achieve notable results in various downstream validation tasks, demonstrating their ability to represent diverse biological entities effectively. Undoubtedly, FMs have ushered in a new era in computational biology, especially in the realm of deep learning. The primary goal of this survey is to conduct a systematic investigation and summary of FMs in bioinformatics, tracing their evolution, current research status, and the methodologies employed. Central to our focus is the application of FMs to specific biological problems, aiming to guide the research community in choosing appropriate FMs for their research needs. We delve into the specifics of the problem at hand including sequence analysis, structure prediction, function annotation, and multimodal integration, comparing the structures and advancements against traditional methods. Furthermore, the review analyses challenges and limitations faced by FMs in biology, such as data noise, model explainability, and potential biases. Finally, we outline potential development paths and strategies for FMs in future biological research, setting the stage for continued innovation and application in this rapidly evolving field. This comprehensive review serves not only as an academic resource but also as a roadmap for future explorations and applications of FMs in biology.